USDA-VS / vSNPLinks
vSNP -- validate SNPs
☆22Updated last year
Alternatives and similar repositories for vSNP
Users that are interested in vSNP are comparing it to the libraries listed below
Sorting:
- Various scripts for efficient processing of 10k Salmonella genomes☆16Updated 4 years ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- Advanced metagenomic Sequence Analysis in R☆15Updated 7 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated last month
- A reference viral database (RVDB)☆26Updated 7 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Updated 5 years ago
- ☆30Updated 5 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆46Updated 6 years ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆33Updated 6 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- de.NBI Nanopore Training Course☆21Updated 7 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated last year
- ☆53Updated 4 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Updated 3 years ago
- ☆29Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Visualize whole genome alignments as linear maps☆74Updated 2 weeks ago