USDA-VS / vSNPLinks
vSNP -- validate SNPs
☆21Updated 10 months ago
Alternatives and similar repositories for vSNP
Users that are interested in vSNP are comparing it to the libraries listed below
Sorting:
- Various scripts for efficient processing of 10k Salmonella genomes☆14Updated 3 years ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆24Updated 6 months ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Updated 3 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 11 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Simple bacterial assembly and annotation pipeline☆75Updated 2 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Tutorial on using E-utilities☆22Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆56Updated 4 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆28Updated 2 weeks ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated this week
- Visualize whole genome alignments as linear maps☆73Updated last week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- ☆28Updated 3 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆46Updated 4 years ago
- Ancient microbiome snakemake workflow☆26Updated 4 months ago
- Microbiome classification pipeline☆66Updated 3 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 weeks ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago