Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
☆23Feb 29, 2024Updated 2 years ago
Alternatives and similar repositories for rd-imputation-accuracy
Users that are interested in rd-imputation-accuracy are comparing it to the libraries listed below
Sorting:
- Imputation-beagle-tutorial☆38Jun 2, 2022Updated 3 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- ☆12Jun 12, 2023Updated 2 years ago
- ☆18Dec 15, 2021Updated 4 years ago
- ☆13May 16, 2016Updated 9 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Readme☆10Mar 15, 2020Updated 5 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated 2 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 5 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 6 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 2 weeks ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- ☆24Nov 9, 2017Updated 8 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- A series of scripts to automate sequence workflows☆19Jan 24, 2026Updated last month
- Scripts for gathering SLURM statistics☆23Oct 6, 2018Updated 7 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- ☆10Jan 30, 2020Updated 6 years ago
- ☆10Dec 2, 2025Updated 3 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 22, 2026Updated last week
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- shared scripts in Lu Lab @ Tsinghua University☆14Nov 7, 2018Updated 7 years ago
- An R package for plotting GWAS results from the GAPIT package☆14Oct 9, 2025Updated 4 months ago
- Scripts for next generation sequencing analyses☆15Nov 6, 2025Updated 3 months ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago