selfdecode / rd-imputation-accuracy
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.
☆22Updated 10 months ago
Alternatives and similar repositories for rd-imputation-accuracy:
Users that are interested in rd-imputation-accuracy are comparing it to the libraries listed below
- Structural variant merging tool☆49Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Structural Variant Index☆70Updated last month
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- ☆39Updated 8 months ago
- ☆51Updated 5 years ago
- Comprehensive benchmark of structural variant callers☆44Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Variant annotation and merging pipeline☆31Updated last week
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆55Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆21Updated 5 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- ☆39Updated 4 months ago
- ☆79Updated 8 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 3 years ago
- ☆35Updated 3 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆28Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 3 months ago
- ☆47Updated 4 years ago
- ☆22Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Counts the number of reads which map to either the reference or alternate allele at each heterozygous SNP.☆23Updated 6 years ago
- Evaluation of phasing performance☆22Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Scripts and utilities related to analyzing short tandem repeats (STRs).☆32Updated this week