R package for pedigree inference based on SNP data
☆28Jan 4, 2026Updated last month
Alternatives and similar repositories for sequoia
Users that are interested in sequoia are comparing it to the libraries listed below
Sorting:
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆15Aug 14, 2024Updated last year
- ☆17Oct 18, 2024Updated last year
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆10Aug 24, 2025Updated 6 months ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Dec 19, 2025Updated 2 months ago
- A python3 package for operations on pedigree and genotype data☆21Nov 13, 2017Updated 8 years ago
- Snakemake module for the snpArcher pipeline for population size change inference.☆10Nov 12, 2024Updated last year
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 6 months ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 2 months ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 4 years ago
- Data files useful for BLUPF90 programs☆19Feb 26, 2021Updated 5 years ago
- Tools for working with pedigrees in R☆28Feb 1, 2026Updated last month
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆49Nov 13, 2023Updated 2 years ago
- R functions related to pedigrees☆14Sep 29, 2025Updated 5 months ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- R packages for pedigree analysis☆16Feb 10, 2026Updated 3 weeks ago
- ☆15Aug 22, 2023Updated 2 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- Sex assignment through coverage☆20May 23, 2025Updated 9 months ago
- Plant breeding simulations with AlphaSimR☆27Jan 5, 2025Updated last year
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- ☆21Oct 2, 2024Updated last year
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single …☆22Jul 19, 2018Updated 7 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- Website to analyze conflicting assertions in ClinVar☆19Jan 24, 2026Updated last month
- ☆19Jan 24, 2018Updated 8 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Feb 8, 2026Updated 3 weeks ago
- Julia for Whole-genome Analysis Software☆104Updated this week
- asremlPlus is an R package that augments the use of 'ASReml-R' and 'ASReml4-R' in fitting mixed models☆20Nov 8, 2025Updated 3 months ago
- A tutorial of the BLUPF90 family programs☆27Apr 28, 2025Updated 10 months ago
- Algorithm for rapid, phase-free detection of long identical by descent segments☆23Mar 31, 2024Updated last year
- ☆25Apr 29, 2018Updated 7 years ago
- A simple script to create a customizable html file from an AnnotSV output.☆20May 3, 2024Updated last year
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- Importing and Analysing DArT type snp and silicodart data☆36Mar 27, 2025Updated 11 months ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- ☆20Dec 13, 2023Updated 2 years ago