de Bruijn Workflow using Integral information of Short pair End reads
☆13Aug 21, 2024Updated last year
Alternatives and similar repositories for BWISE
Users that are interested in BWISE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaCarvel: A scaffolder for metagenomes☆14Sep 17, 2024Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 3 years ago
- A Rust implementation of sliding window stats over fastas.☆15Sep 2, 2025Updated 7 months ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- ☆29Mar 5, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Haplotype-aware assembly of complex regions and small genomes☆15Nov 21, 2025Updated 4 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 5 years ago
- General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there a…☆12Oct 13, 2020Updated 5 years ago
- Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants☆23Mar 16, 2026Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆78Mar 13, 2026Updated 3 weeks ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆16May 2, 2020Updated 5 years ago
- GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments☆18Aug 19, 2016Updated 9 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- ☆15Jul 21, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 7 months ago
- ☆10Dec 4, 2019Updated 6 years ago
- ☆10Jul 1, 2020Updated 5 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 3 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Accompanying code for AAAI 2021 publication - High-Dimensional Bayesian Optimization via Tree-Structured Additive Models☆11Jun 19, 2024Updated last year
- Beiwe is a smartphone-based digital phenotyping research platform. This repository contains some data analysis code.☆14Feb 10, 2020Updated 6 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R humanize functions☆13Apr 4, 2018Updated 8 years ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- Dynamic FBA for use with COBRApy metabolic models☆10Sep 26, 2023Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated last month
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- ☆11Feb 4, 2021Updated 5 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 7 months ago