A Python package for single-cell spatial image analysis.
☆18Aug 24, 2023Updated 2 years ago
Alternatives and similar repositories for pySpacell
Users that are interested in pySpacell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated last month
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆39Dec 22, 2020Updated 5 years ago
- Code from today's Live Stream☆11Jan 2, 2022Updated 4 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 6 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆17Jun 15, 2023Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 5 months ago
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 3 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 6 months ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 3 years ago
- transport accessibility measures in Python☆21Sep 24, 2020Updated 5 years ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Modular, object-based analysis for ImageJ/Fiji☆16Apr 28, 2026Updated last week
- This is our implementation of Probabilistic Noise2Void☆78Aug 28, 2023Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆62Dec 6, 2023Updated 2 years ago
- torchlogic is a pytorch framework for developing Neuro-Symbolic AI systems and implements Neural Reasoning Networks.☆18Sep 18, 2025Updated 7 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- Emacs syntax highlight for the mojo programming language☆13Feb 27, 2024Updated 2 years ago
- ☆58Jan 18, 2022Updated 4 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆14Apr 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Auction Algorithm for Sparse Linear Assignment Problems☆13Mar 15, 2021Updated 5 years ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆38Feb 6, 2026Updated 3 months ago
- ☆17Jun 15, 2023Updated 2 years ago
- Command-line client for Fractal☆48Apr 28, 2026Updated last week
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 5 months ago
- Planar Point Pattern Analysis in PySAL☆95Apr 28, 2026Updated last week
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 7 years ago
- Med-NCA: Robust and Lightweight Segmentation with Neural Cellular Automata☆12Jun 2, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Localization analysis software for super-resolution microscopy☆23Updated this week
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆10Sep 3, 2021Updated 4 years ago
- Function to generate troop deployment data.☆36Feb 25, 2026Updated 2 months ago
- Microsnoop: A generalist tool for microscopy image representation☆11Feb 27, 2025Updated last year
- A comparison of Cesium and ArcGIS API for JavaScript☆13Nov 13, 2017Updated 8 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago