A Python package for single-cell spatial image analysis.
☆18Aug 24, 2023Updated 2 years ago
Alternatives and similar repositories for pySpacell
Users that are interested in pySpacell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 2 months ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆39Dec 22, 2020Updated 5 years ago
- Code from today's Live Stream☆11Jan 2, 2022Updated 4 years ago
- ☆16Jan 18, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 8 months ago
- Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors☆17Jun 15, 2023Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 6 months ago
- STREAM2: Fast, scalable, and interactive trajectory analysis of single-cell omics data☆13Apr 1, 2024Updated 2 years ago
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 4 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 8 months ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- transport accessibility measures in Python☆21Sep 24, 2020Updated 5 years ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modular, object-based analysis for ImageJ/Fiji☆16Updated this week
- This is our implementation of Probabilistic Noise2Void☆78Aug 28, 2023Updated 2 years ago
- Open-source Python package designed for integration of deep learning (first DL) and traffic simulation, by extending original C++ based s…☆27Oct 8, 2024Updated last year
- torchlogic is a pytorch framework for developing Neuro-Symbolic AI systems and implements Neural Reasoning Networks.☆20Sep 18, 2025Updated 8 months ago
- ☆16Jul 21, 2023Updated 2 years ago
- ☆57Jan 18, 2022Updated 4 years ago
- Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation☆28Feb 3, 2021Updated 5 years ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Auction Algorithm for Sparse Linear Assignment Problems☆13Mar 15, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆39Feb 6, 2026Updated 4 months ago
- ☆17Jun 15, 2023Updated 3 years ago
- Command-line client for Fractal☆49Updated this week
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 7 months ago
- This repository contains the source code for the Semantic Knowledge Extractor Tool (SKET). SKET is an unsupervised hybrid knowledge extra…☆13Apr 18, 2023Updated 3 years ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Reads ImageJ ROI files into numpy arrays.☆14Feb 21, 2019Updated 7 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 7 years ago
- Med-NCA: Robust and Lightweight Segmentation with Neural Cellular Automata☆12Jun 2, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Localization analysis software for super-resolution microscopy☆23Apr 30, 2026Updated last month
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- ECCB2021 tutorial: Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification☆10Sep 3, 2021Updated 4 years ago
- ☆14Aug 5, 2015Updated 10 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- The repository provide augment function of "Stain mix-up: Unsupervised domain generalization for histopathology images"☆12Feb 22, 2022Updated 4 years ago
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆23May 26, 2026Updated 2 weeks ago