ljdursi / mergevcfLinks
Python package and routines for merging VCF files
☆29Updated 4 years ago
Alternatives and similar repositories for mergevcf
Users that are interested in mergevcf are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆51Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆35Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆31Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Structural variant caller☆55Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Structural Variant Index☆75Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago
- ☆32Updated 3 years ago