Python package and routines for merging VCF files
☆29Apr 1, 2021Updated 5 years ago
Alternatives and similar repositories for mergevcf
Users that are interested in mergevcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- heuristics to merge structural variant calls in VCF format.☆38Oct 6, 2016Updated 9 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Linear-time, low-memory construction of variation graphs☆20Aug 28, 2026Updated 3 weeks ago
- A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow☆19Jan 22, 2020Updated 6 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Stupid Simple Structural Variant View☆26Nov 21, 2016Updated 9 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- Tools for processing and analyzing structural variants.☆158May 2, 2022Updated 4 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- annotate a VCF with other VCFs/BEDs/tabixed files☆403Jun 16, 2026Updated 3 months ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆52May 27, 2025Updated last year
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated 2 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Aug 1, 2014Updated 12 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Sep 16, 2021Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- ☆36Aug 13, 2020Updated 6 years ago
- perform genotype-phenotype-association tests on a VCF with logistic regression.☆20Dec 15, 2015Updated 10 years ago
- ☆13Jun 21, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- Bayesian genotyper for structural variants☆137Apr 13, 2026Updated 5 months ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆54Oct 12, 2023Updated 2 years ago
- Genetic changes we can believe in: a web based tool for variant visualization and analysis☆18Apr 17, 2013Updated 13 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Read visualizer for structural variants☆85Aug 18, 2018Updated 8 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆573Jul 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆12Jan 15, 2021Updated 5 years ago
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- for visual evaluation of read support for structural variation☆56Jun 4, 2024Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆109Dec 14, 2020Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Jun 30, 2017Updated 9 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated 2 years ago
- ☆25May 21, 2021Updated 5 years ago