ljdursi / mergevcfLinks
Python package and routines for merging VCF files
☆29Updated 4 years ago
Alternatives and similar repositories for mergevcf
Users that are interested in mergevcf are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆51Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated this week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- ☆35Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Structural variant merging tool☆54Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆81Updated 6 months ago
- Structural variant caller☆55Updated 3 years ago
- ☆44Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago