RCollins13 / CNViewLinks
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
☆72Updated 7 years ago
Alternatives and similar repositories for CNView
Users that are interested in CNView are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- BAM Statistics, Feature Counting and Annotation☆151Updated this week
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated last year
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- QDNAseq package for Bioconductor☆53Updated last year
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆50Updated 2 years ago
- Platypus Variant Caller☆108Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- An awk-like VCF parser☆56Updated last year
- NEAT read simulation tools☆101Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 5 months ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- ☆78Updated 11 years ago