RCollins13 / CNViewLinks
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
☆72Updated 7 years ago
Alternatives and similar repositories for CNView
Users that are interested in CNView are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 3 months ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆116Updated 3 months ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- ☆82Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- ☆53Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 11 months ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- QDNAseq package for Bioconductor☆52Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated last month
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago