RCollins13 / CNView
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
☆71Updated 7 years ago
Alternatives and similar repositories for CNView:
Users that are interested in CNView are comparing it to the libraries listed below
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago
- Read visualizer for structural variants☆82Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- ☆78Updated 11 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- A tool for profiling long STRs from short reads☆95Updated 3 years ago
- An awk-like VCF parser☆56Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 9 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆82Updated 6 years ago
- ☆39Updated 10 months ago
- ☆52Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Structural Variant Index☆72Updated 2 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- WisecondorX — An evolved WISECONDOR☆96Updated 5 months ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆105Updated 3 weeks ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆69Updated last month
- CNV screening and annotation tool☆24Updated 8 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 weeks ago
- ABRA2☆92Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 weeks ago
- QDNAseq package for Bioconductor☆49Updated 7 months ago