lucapinello / HaystackLinks
Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
☆31Updated 8 years ago
Alternatives and similar repositories for Haystack
Users that are interested in Haystack are comparing it to the libraries listed below
Sorting:
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated last week
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆21Updated 8 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Code to reproduce analyses from the sleuth paper☆16Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 9 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- Genetics training camp☆21Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- ☆35Updated 9 years ago
- Normalization for single cell RNA-seq data☆49Updated 4 months ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- TFFM framework☆13Updated last month
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- easy access to benchmark datasets☆50Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago