Alternatives and similar repositories for xswap

Users that are interested in xswap are comparing it to the libraries listed below

• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 8 months ago
• hetio / hetmatpy
  Python package for matrix storage and operations on hetnets
  ☆15Updated 2 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆28Updated last week
• gyorilab / pybiopax
  PyBioPAX: A python implementation of the BioPAX object model
  ☆24Updated last year
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated last year
• greenelab / finish-that-manuscript
  Ten quick tips to finish that manuscript that's 90% complete.
  ☆13Updated 3 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆29Updated 2 years ago
• p-koo / deepomics
  deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis
  ☆22Updated 2 years ago
• MaayanLab / appyter
  jinja2-enabled jupyter notebooks
  ☆37Updated last week
• HUPO-PSI / psi-mod-CV
  PSI-MOD ontology for modified and unmodified amino acid residues
  ☆14Updated last week
• obophenotype / provisional_cell_ontology
  Draft cell type definitions from data - candidates for inclusion in CL
  ☆12Updated 5 months ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆45Updated last month
• MoseleyBioinformaticsLab / mwtab
  The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…
  ☆12Updated this week
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆20Updated 5 years ago
• biohackathons / biohackathons.github.io
  International BioHackathon Directory of Events, Projects and Communities
  ☆12Updated 4 months ago
• Genentech / SIGnature
  SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …
  ☆22Updated 5 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 3 years ago
• RuleWorld / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆14Updated 3 months ago
• AstraZeneca / skywalkR
  code for Gogleva et al manuscript
  ☆46Updated 3 years ago
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆20Updated 6 years ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆20Updated last year
• opentargets-archive / opentargets-py
  Python client for the Open Targets REST API at targetvalidation.org
  ☆25Updated 3 months ago
• EBI-BioModels / SBO
  The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…
  ☆11Updated 2 years ago
• unlearnai / genemunge
  Tools for munging genomic data
  ☆21Updated 6 years ago
• emreg00 / repurpose
  Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers
  ☆17Updated 7 years ago
• mims-harvard / pathways
  Disease pathways in the human interactome
  ☆23Updated 7 years ago
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 6 months ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆31Updated 3 years ago
• dmis-lab / moable
  Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding
  ☆14Updated 2 years ago