hetio / xswapLinks
Python library (C++ backend) for degree-preserving network randomization
☆14Updated 6 years ago
Alternatives and similar repositories for xswap
Users that are interested in xswap are comparing it to the libraries listed below
Sorting:
- 🪝 What's the latest version for each database?☆27Updated 2 weeks ago
- Python package for matrix storage and operations on hetnets☆15Updated 2 years ago
- A project to capture biological pathway data from academic papers☆29Updated 7 months ago
- Similarity search in heterogeneous knowledge graphs using meta paths.☆29Updated 2 years ago
- Tools for building and manipulating graphs in Python☆45Updated 3 weeks ago
- Processed Cell Painting Data for the LINCS Drug Repurposing Project☆31Updated 3 years ago
- International BioHackathon Directory of Events, Projects and Communities☆12Updated 4 months ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- Ten quick tips to finish that manuscript that's 90% complete.☆13Updated 3 years ago
- jinja2-enabled jupyter notebooks☆37Updated this week
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated last year
- code for Gogleva et al manuscript☆46Updated 2 years ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- Reproducible drug repurposing: a Python-based framework for building drug-disease association classifiers☆17Updated 7 years ago
- PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference☆11Updated last year
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Python client for the Open Targets REST API at targetvalidation.org☆25Updated 3 months ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Updated last year
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated 2 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated 2 weeks ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 months ago
- Connect the dots in networks.☆20Updated 5 years ago
- Network-based Drug Repurposing for Human Coronavirus☆40Updated 5 years ago
- Tools for munging genomic data☆21Updated 6 years ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆13Updated 2 weeks ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 4 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 4 months ago
- A Data-Driven Approach to Predicting Successes and Failures of Clinical Trials☆21Updated 6 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- Literature mining for T cell relations☆23Updated 3 years ago