Alternatives and similar repositories for ucscBeacon

Users that are interested in ucscBeacon are comparing it to the libraries listed below

• cea-hpc / bridge

  View on GitHub
  Bridge CEA In-House Batch Environment gives a uniform way to access external Batch scheduling systems.
  ☆16Dec 8, 2025Updated 2 months ago
• Kayla-Morrell / CreateAPackage

  View on GitHub
  The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…
  ☆11Jul 29, 2020Updated 5 years ago
• greenelab / GCB535

  View on GitHub
  Materials for GCB535 at Penn.
  ☆20Apr 19, 2019Updated 6 years ago
• DIncalciLab / samurai

  View on GitHub
  A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…
  ☆14Feb 5, 2026Updated last week
• nrennie / rss-2023-teaching-webR

  View on GitHub
  Quarto revealjs slides for RSS International Conference 2023 presentation on teaching with webR.
  ☆17Aug 11, 2024Updated last year
• tgen / MMRF_CoMMpass

  View on GitHub
  A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.
  ☆23Nov 23, 2025Updated 2 months ago
• CompEpigen / MeDeCom

  View on GitHub
  Decomposition of heterogeneous DNA methylomes
  ☆23Jul 10, 2024Updated last year
• edg1983 / GREEN-VARAN

  View on GitHub
  Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF
  ☆20Jun 13, 2025Updated 8 months ago
• lcolladotor / biocthis

  View on GitHub
  Automate package and project setup for Bioconductor packages
  ☆54Mar 21, 2025Updated 10 months ago
• lh3 / bgt

  View on GitHub
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Sep 4, 2019Updated 6 years ago
• vjcitn / CSHstats

  View on GitHub
  R vignettes/pkgdown for elementary statistics for a summer course
  ☆14Jan 9, 2025Updated last year
• mgymrek / pybeeswarm

  View on GitHub
  Beeswarm plots for python
  ☆34Nov 2, 2015Updated 10 years ago
• Simon-Coetzee / motifBreakR

  View on GitHub
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆32Aug 1, 2024Updated last year
• ryanlayer / gqt

  View on GitHub
  A genotype query interface.
  ☆136Mar 29, 2021Updated 4 years ago
• CshlSiepelLab / LINSIGHT

  View on GitHub
  ☆26Jun 4, 2025Updated 8 months ago
• iqbal-lab / cortex

  View on GitHub
  reference free variant assembly
  ☆34Jul 14, 2023Updated 2 years ago
• lh3 / panmask

  View on GitHub
  Easy genomic regions for short-read variant calling
  ☆45Sep 10, 2025Updated 5 months ago
• ctsa / svtools

  View on GitHub
  Tools for processing and analyzing structural variants.
  ☆34Sep 8, 2015Updated 10 years ago
• marasteiger / MethyLYZR

  View on GitHub
  MethyLYZR: a Naïve Bayesian framework for rapid brain tumor classification from sparse epigenomic data
  ☆16Mar 3, 2025Updated 11 months ago
• suchestoncampbelllab / gwasurvivr

  View on GitHub
  GWAS Survival Package in R
  ☆13Nov 16, 2023Updated 2 years ago
• BovReg / BovReg_eQTL

  View on GitHub
  Repository
  ☆10Oct 23, 2024Updated last year
• wmacnair / psupertime

  View on GitHub
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆47Jul 20, 2022Updated 3 years ago
• yandgong307 / human_macrophage_project

  View on GitHub
  scripts for analyzing data of macrophage development in human
  ☆10Dec 8, 2019Updated 6 years ago
• AlphaGenes / AlphaImpute2

  View on GitHub
  AlphaImpute2: pedigree- and population-based genotype imputation
  ☆12Dec 19, 2025Updated last month
• nkrumm / s3proxy

  View on GitHub
  S3proxy provides a simple REST-interface to files and keys stored on the AWS S3 service.
  ☆13Apr 2, 2014Updated 11 years ago
• HMPNK / CSA2.6

  View on GitHub
  Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes
  ☆10Oct 16, 2024Updated last year
• rmacklin / team-sync

  View on GitHub
  A GitHub action to synchronize GitHub Teams with the contents of a teams document
  ☆10Jul 19, 2023Updated 2 years ago
• patidarr / annotation-pipeline

  View on GitHub
  ☆10May 17, 2017Updated 8 years ago
• rjstevick / Pasteur-canteen-desserts

  View on GitHub
  A Survey of Canteen Desserts at Institut Pasteur
  ☆12Nov 18, 2022Updated 3 years ago
• data-fun / 3d-genome-builder

  View on GitHub
  3DGB is a workflow to build 3D models of genomes from HiC data
  ☆13Jan 26, 2026Updated 2 weeks ago
• memiks / ffp_packages

  View on GitHub
  My repository of packages source for fun_plug 0.7
  ☆10Sep 22, 2014Updated 11 years ago
• nrennie / rss-2023-data-viz

  View on GitHub
  Slides for the RSS International Conference 2023 workshop on data visualisation.
  ☆10Aug 11, 2024Updated last year
• cpwardell / FiNGS

  View on GitHub
  Filters for Next Generation Sequencing
  ☆12Oct 31, 2024Updated last year
• epurdom / clusterExperiment

  View on GitHub
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆41Apr 26, 2024Updated last year
• cloudflare / json-schema-example-loader

  View on GitHub
  Webpack loader that transforms JSON Schemas (without $refs) into examples.
  ☆14Sep 25, 2024Updated last year
• ropensci-archive / exploRingJSON

  View on GitHub
  ARCHIVED
  ☆11May 10, 2022Updated 3 years ago
• Simon-Coetzee / StatePaintR

  View on GitHub
  ☆10Jan 8, 2018Updated 8 years ago
• raphael-group / multibreak-sv

  View on GitHub
  MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…
  ☆12Jul 19, 2016Updated 9 years ago
• mrecos / hypurrr-ameters

  View on GitHub
  R scripts and executable binder for blog post about using Purrr for mapping over ML hyperparameters
  ☆11May 15, 2019Updated 6 years ago