viq854 / bwbble
Read alignment with a multi-genome reference
☆22Updated 5 years ago
Alternatives and similar repositories for bwbble
Users that are interested in bwbble are comparing it to the libraries listed below
Sorting:
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆28Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- ☆24Updated 7 years ago
- Workflow Description Language (WDL) scripts for common vg workflows☆20Updated last month
- ☆34Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- gvcf aggregation tool☆12Updated 7 years ago