Read alignment with a multi-genome reference
☆23Jan 14, 2020Updated 6 years ago
Alternatives and similar repositories for bwbble
Users that are interested in bwbble are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 11 months ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- Low memory multithreaded hash table☆25Mar 23, 2015Updated 11 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- de Bruijn Graph-based read aligner☆11Jul 19, 2016Updated 10 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 13 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 10 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Nov 27, 2025Updated 11 months ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- BWT-based index for graphs☆72Aug 19, 2026Updated 2 months ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆16May 4, 2016Updated 10 years ago
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- FM-index representation of a de Bruijn graph☆27Aug 7, 2017Updated 9 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 9 years ago
- A tool for merging large BWTs☆23Nov 26, 2020Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago
- Succinct Data Structure Library 2.0☆11Oct 10, 2026Updated 3 weeks ago
- ☆11Apr 3, 2023Updated 3 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆19May 21, 2017Updated 9 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 10 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Oct 1, 2013Updated 13 years ago
- Detect recombination hotspots using population genetic data.☆18Jun 10, 2020Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated 2 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 7 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Feb 23, 2017Updated 9 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A tool set for short variant discovery in genetic sequence data.☆207May 4, 2021Updated 5 years ago