Read alignment with a multi-genome reference
☆23Jan 14, 2020Updated 6 years ago
Alternatives and similar repositories for bwbble
Users that are interested in bwbble are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 4 months ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- Algorithms that work on generic C arrays☆11Feb 13, 2017Updated 9 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- de Bruijn Graph-based read aligner☆35Sep 3, 2018Updated 7 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 7 years ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- Fastq compression☆19Oct 3, 2019Updated 6 years ago
- BWT-based index for graphs☆73Mar 12, 2025Updated last year
- A Bayesian method for doing transcriptome assembly from RNA-seq data☆25Feb 2, 2015Updated 11 years ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A genotype query interface.☆136Mar 29, 2021Updated 5 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 9 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆73Mar 1, 2019Updated 7 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- ☆12Sep 11, 2025Updated 6 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆20Updated this week
- ☆15Mar 7, 2016Updated 10 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Low memory multithreaded hash table☆24Mar 23, 2015Updated 11 years ago
- ☆315Jan 15, 2026Updated 2 months ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- compressed, queryable variation graphs☆11Jun 25, 2015Updated 10 years ago