viq854 / bwbble
Read alignment with a multi-genome reference
☆22Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for bwbble
- Adaptive semi-global banded alignment on string graphs☆63Updated 6 years ago
- ☆28Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆25Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- PacBio BAM C++ library☆21Updated last year
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Workflow Description Language (WDL) scripts for common vg workflows☆18Updated 3 weeks ago
- Graph based multi genome aligner☆46Updated 3 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Parallel Sequence to Graph Alignment☆35Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆51Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Updated 6 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- This is an updated mirror of the original PacBio Read Simulator☆37Updated 6 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 5 months ago
- A tool to construct repeats directly from raw reads☆16Updated 3 years ago