Fine-tuning polygenic risk score models using GWAS summary statistics
☆54Oct 19, 2025Updated 5 months ago
Alternatives and similar repositories for PUMAS
Users that are interested in PUMAS are comparing it to the libraries listed below
Sorting:
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆17Feb 19, 2026Updated last month
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆202Aug 21, 2024Updated last year
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- ☆27Aug 20, 2020Updated 5 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- ☆30Oct 18, 2021Updated 4 years ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 6 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆35Aug 28, 2020Updated 5 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Apr 8, 2024Updated last year
- A tutorial on how to run basic polygenic risk score analysis☆84Jan 24, 2023Updated 3 years ago
- GWAS summary statistics files QC tool☆42Dec 24, 2024Updated last year
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆159Dec 11, 2025Updated 3 months ago
- PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.☆30Aug 22, 2024Updated last year
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- ☆21Nov 15, 2024Updated last year
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆16Oct 7, 2025Updated 5 months ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- ☆14Jun 24, 2024Updated last year
- Valid and Powerful Machine-Learning-Assisted Genetic Association Studies☆23Jan 2, 2026Updated 2 months ago
- ☆17Aug 25, 2025Updated 6 months ago
- GWAS Summary Statistics Data Harmonisation☆25Jan 7, 2026Updated 2 months ago
- ☆57Jan 16, 2025Updated last year
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Nov 26, 2023Updated 2 years ago
- Manhattan++☆29Feb 13, 2024Updated 2 years ago
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆27Dec 10, 2025Updated 3 months ago
- Documentation on new GWAS Summary Statistics Standard☆24Nov 19, 2025Updated 4 months ago
- ☆13Oct 1, 2025Updated 5 months ago
- ☆21Aug 20, 2024Updated last year
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)☆14May 20, 2021Updated 4 years ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 9 months ago
- The gsmr R-package implements the GSMR (Generalised Summary-data-based Mendelian Randomisation) method that uses GWAS summary statistics …☆20Apr 26, 2024Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆59Feb 12, 2021Updated 5 years ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- ☆19Aug 7, 2025Updated 7 months ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆201Jul 6, 2023Updated 2 years ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year