realbigws / cwDTW
Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals
☆19Updated 6 years ago
Alternatives and similar repositories for cwDTW:
Users that are interested in cwDTW are comparing it to the libraries listed below
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- simple and not slow ORF caller☆21Updated 6 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆37Updated 8 months ago
- aCcelerated Alignment-FrEe sequence analysis☆13Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆24Updated 11 months ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆10Updated 3 weeks ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆10Updated last week
- Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…☆10Updated 4 years ago
- ☆15Updated 5 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated this week
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- MicroPheno Project☆13Updated 2 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Updated 8 years ago
- Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.☆19Updated 7 years ago
- Nanopore basecalling and consensus decoding☆46Updated 2 years ago
- cgat-apps repository☆34Updated 4 months ago
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 2 years ago
- ☆24Updated 6 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated 10 months ago
- ☆28Updated last year
- A simple toolkit for manipulating nanopore signal data☆18Updated 6 months ago
- Metagenomics microbial abundance quantification☆27Updated 2 years ago
- ☆25Updated 4 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆17Updated 5 years ago