Alternatives and similar repositories for cwDTW

Users that are interested in cwDTW are comparing it to the libraries listed below

• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 4 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 6 years ago
• jmschrei / PyPore
  Tools used to analyze data from nanopore-based experiments.
  ☆30Updated 10 years ago
• PengNi / deepsignal2
  ☆29Updated last year
• bartongroup / differr_nanopore_DRS
  Scripts for identifying sites with differential error rates in mapped nanopore DRS data
  ☆11Updated 4 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆32Updated 3 weeks ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆30Updated 6 months ago
• jasminezhoulab / CancerLocator
  A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.
  ☆15Updated 6 years ago
• Psy-Fer / deeplexicon
  Signal based nanopore RNA demultiplexing with convolutional neural networks
  ☆38Updated last year
• welch-lab / SquiggleNet
  ☆21Updated this week
• qunfengdong / MicroGMT
  Mutation tracker for microbial genomes
  ☆14Updated 5 years ago
• DepledgeLab / DRUMMER
  DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
  ☆21Updated 3 years ago
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 months ago
• CalabreseLab / seekr
  A library for counting small kmer frequencies in nucleotide sequences.
  ☆28Updated 11 months ago
• GuipengLi / SharePathway
  a python package for KEGG pathway enrichment analysis with multiple gene lists.
  ☆36Updated 7 years ago
• FunctionLab / DeepArk
  Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning
  ☆17Updated 4 years ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 8 months ago
• jts / methylation-analysis
  ☆45Updated 8 years ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated 2 years ago
• algo-cancer / CAMMiQ
  Metagenomics microbial abundance quantification
  ☆27Updated 3 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated 2 years ago
• csoneson / NativeRNAseqComplexTranscriptome
  Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
  ☆19Updated 5 years ago
• pb-jchin / VariantNET
  A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference
  ☆59Updated 7 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆22Updated last year
• icthrm / cwSDTWnano
  Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warping for nanopore raw signal search (DSDTWnano) and the con…
  ☆10Updated 5 years ago
• jianhong / motifStack
  Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
  ☆17Updated 5 months ago
• marcus1487 / nanoraw
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆47Updated 6 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year