Alternatives and similar repositories for PyPore:

Users that are interested in PyPore are comparing it to the libraries listed below

• Oshlack / STRetch
  Method for detecting STR expansions from short-read sequencing data
  ☆62Updated 3 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 7 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆65Updated 2 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 8 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 9 months ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• acg-team / tral
  Tandem Repeat Annotation Library
  ☆24Updated last year
• grocsvs / grocsvs
  Genome-wide reconstruction of complex structural variants
  ☆39Updated 2 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 7 years ago
• bioinform / metasv
  MetaSV: An accurate and integrative structural-variant caller for next generation sequencing
  ☆55Updated 7 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 3 years ago
• LUMC / kPAL
  Analysis toolkit and programming library for k-mer profiles
  ☆30Updated 3 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 5 months ago
• swainechen / lacer
  Lacer: Accurate Base Quality Score Recalibration using Linear Algebra
  ☆8Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• vgteam / vg_wdl
  Workflow Description Language (WDL) scripts for common vg workflows
  ☆20Updated 3 months ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆67Updated last month
• marcus1487 / nanoraw
  Genome guided re-segmention and visualization for raw nanopore sequencing data.
  ☆46Updated 6 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆33Updated last year
• broadinstitute / wdltool
  ☆18Updated 7 years ago
• ncbi / magicblast
  ☆35Updated last year
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 7 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 6 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 2 years ago