Tools used to analyze data from nanopore-based experiments.
☆32Feb 1, 2015Updated 11 years ago
Alternatives and similar repositories for PyPore
Users that are interested in PyPore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Feb 19, 2017Updated 9 years ago
- a simulator of long read sequencing in pacbio and oxford nanopore☆15Oct 13, 2016Updated 9 years ago
- multi-tool QC for minion data☆11May 28, 2018Updated 8 years ago
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 10 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Jul 24, 2015Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- UCSC Nanopore☆43Aug 11, 2019Updated 7 years ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- Quality control plotting for long reads☆10May 14, 2024Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆13Sep 22, 2026Updated 2 weeks ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 4 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- An Oxford Nanopore Basecaller☆71Sep 4, 2021Updated 5 years ago
- Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals☆20Jan 14, 2019Updated 7 years ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆165Aug 21, 2026Updated last month
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- slow5lib is a software library for reading & writing SLOW5 files.☆49Aug 24, 2026Updated last month
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated last month
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆18Jun 4, 2026Updated 4 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆122Oct 20, 2020Updated 5 years ago
- ☆11Sep 28, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆21Nov 1, 2019Updated 6 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- ☆84Jan 6, 2025Updated last year
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- ☆12Mar 10, 2024Updated 2 years ago