jmschrei / PyPoreLinks
Tools used to analyze data from nanopore-based experiments.
☆30Updated 10 years ago
Alternatives and similar repositories for PyPore
Users that are interested in PyPore are comparing it to the libraries listed below
Sorting:
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- ☆36Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 9 months ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆20Updated last month
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago