jmschrei / PyPoreLinks
Tools used to analyze data from nanopore-based experiments.
☆31Updated 10 years ago
Alternatives and similar repositories for PyPore
Users that are interested in PyPore are comparing it to the libraries listed below
Sorting:
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Biological Graphic tool in Python☆34Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- ☆36Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆28Updated 8 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆36Updated 3 years ago
- Master of Pores 2☆23Updated 11 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 6 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year