jmschrei / PyPore
Tools used to analyze data from nanopore-based experiments.
☆29Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for PyPore
- Annotating principal splice isoforms☆14Updated last month
- Biological Graphic tool in Python☆34Updated 4 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 6 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago
- Workflow Description Language (WDL) scripts for common vg workflows☆17Updated last week
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Python bindings to minimap2☆16Updated 7 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆32Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- Tandem Repeat Annotation Library☆24Updated last year
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆46Updated 5 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Method for detecting STR expansions from short-read sequencing data☆62Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆17Updated 5 years ago
- ☆28Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Python3 module for running MUMmer and reading the output☆26Updated 2 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆25Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago