rqtl / qtl2
QTL analysis software for high-dimensional data and complex cross designs
☆34Updated 2 months ago
Alternatives and similar repositories for qtl2:
Users that are interested in qtl2 are comparing it to the libraries listed below
- Genomic plot in trellis layout☆39Updated 11 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆36Updated 2 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago
- ☆16Updated 5 years ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆43Updated 3 months ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 2 months ago
- ☆28Updated 7 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆17Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆25Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 months ago
- Tao Yan's Plot Toolkit☆11Updated 5 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Interactive eQTL visualizations☆13Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Query the gene models of a given organism/assembly☆26Updated 3 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- Glimma R package☆50Updated 5 months ago
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆16Updated 6 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆37Updated 3 months ago
- ☆21Updated 2 years ago
- ☆21Updated 5 months ago