Alternatives and similar repositories for qtl2

Users that are interested in qtl2 are comparing it to the libraries listed below

• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 11 months ago
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 3 years ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆44Updated last year
• jmonlong / PopSV
  Population-based detection of structural variation from High-Throughput Sequencing.
  ☆31Updated 3 years ago
• Bioconductor / GenomicFeatures
  Query the gene models of a given organism/assembly
  ☆27Updated last week
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 3 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 6 years ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 8 months ago
• js2264 / tidyCoverage
  ☆21Updated 11 months ago
• jtleek / sva-devel
  ☆29Updated last year
• GuangchuangYu / cv
  Guangchuang Yu's CV
  ☆43Updated 7 months ago
• jmw86069 / splicejam
  Sashimi plots for RNA-seq data using detected transcripts
  ☆29Updated 4 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆18Updated 3 years ago
• drisso / peixoto2015_tutorial
  Tutorial to reproduce the analysis of Peixoto et al. (2015)
  ☆9Updated 9 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 months ago
• bvilhjal / mixmogam
  Mixed Model Package For Genome-wide association mapping.
  ☆17Updated 6 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆34Updated 7 years ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆74Updated 2 years ago