rqtl / qtl2data

Related projects ⓘ

Alternatives and complementary repositories for qtl2data

• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆24Updated 4 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated last year
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated last month
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 8 months ago
• joed3 / eigenMT
  An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
  ☆10Updated 5 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• stephenslab / ldshrink
  ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
  ☆11Updated 3 years ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated 2 months ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 5 years ago
• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆42Updated last week
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated 9 months ago
• lamortenera / bamsignals
  R package to quickly obtain count vectors from indexed bam files
  ☆13Updated 3 years ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆12Updated 6 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆16Updated 2 years ago
• js2264 / tidyCoverage
  ☆20Updated 2 months ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 7 years ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated last month
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• gusevlab / hsq_ancestry_examples
  Toy simulations and analyses of heritability and genetic differences
  ☆10Updated 4 months ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆32Updated 3 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• js2264 / VplotR
  R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
  ☆10Updated 11 months ago
• bcm-uga / lfmm
  Fitting latent factor mixed models
  ☆12Updated 4 years ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆13Updated 4 years ago
• jtleek / sva-devel
  ☆28Updated 4 months ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 4 years ago
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 8 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago