Alternatives and similar repositories for qtl2data

Users that are interested in qtl2data are comparing it to the libraries listed below

• gladkia / igvR
  An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser
  ☆46Updated 9 months ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated 10 months ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated 2 months ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆41Updated last year
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 4 months ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 11 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated last month
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated 8 months ago
• jtleek / sva-devel
  ☆29Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆31Updated 10 months ago
• Bioconductor / GenomicRanges
  Representation and manipulation of genomic intervals
  ☆46Updated 2 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• gladkia / igvShiny
  An htmlwidget version of igv, for RStudio and Shiny apps
  ☆38Updated 9 months ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 7 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆104Updated 4 years ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆44Updated 8 months ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆93Updated this week
• joed3 / eigenMT
  An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
  ☆11Updated 5 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
  ☆46Updated this week
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆25Updated last year
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated this week
• lawremi / ggbio
  Grid and ggplot2 based visualization for biological data
  ☆114Updated 3 weeks ago
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆32Updated 11 months ago
• csoneson / treeclimbR
  ☆20Updated last month
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆38Updated last year