Alternatives and similar repositories for QTG_Seq

Users that are interested in QTG_Seq are comparing it to the libraries listed below

• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆28Updated 6 months ago
• LAILAB-CAU / update-Mo17
  ☆25Updated 2 years ago
• weigelworld / pan-nlrome
  The GitHub repository for the A. thaliana pan-NLR'ome project.
  ☆17Updated 6 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆40Updated 4 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• YaoLab-Bioinfo / binQTL
  QTL mapping with binmap data
  ☆18Updated 6 years ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆18Updated 5 years ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆41Updated 10 months ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆41Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last month
• xuzhougeng / binmapr
  R package for binmap
  ☆13Updated last year
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆27Updated 4 months ago
• mcstitzer / maize_v4_TE_annotation
  scripts and intermediate files used to annotate TEs in Jiao et al.
  ☆35Updated 7 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆39Updated last year
• JiangYuLab / CNVcaller
  ☆43Updated last year
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago