Alternatives and similar repositories for ldshrink

Users that are interested in ldshrink are comparing it to the libraries listed below

• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆27Updated 5 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆28Updated last week
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 4 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆46Updated last year
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆30Updated 7 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 3 weeks ago
• rqtl / qtl2data
  Example data for R/qtl2
  ☆13Updated 4 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated 6 months ago
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆32Updated 2 months ago
• DudbridgeLab / avengeme
  Statistical properties of polygenic risk scores
  ☆19Updated 6 years ago
• deruncie / GridLMM
  GridLMM package
  ☆39Updated 2 months ago
• statgen / savvy
  Interface to various variant calling formats.
  ☆31Updated last year
• stephenslab / rss
  RSS: Regression with Summary Statistics
  ☆51Updated last year
• baolinwu / MTAR
  Various multi-trait association tests in R
  ☆11Updated 7 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 4 years ago
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 5 years ago
• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆19Updated last year
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆37Updated 6 months ago
• awohns / ldgm
  Software for linkage disequilibrium graphical models
  ☆16Updated 8 months ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated 2 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last year
• pachterlab / bears_analyses
  Examples of kallisto + sleuth
  ☆11Updated 8 years ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆91Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 7 years ago
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 9 years ago
• cotsapaslab / jlim
  ☆10Updated 2 years ago