stephenslab / ldshrinkLinks
ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium
☆13Updated 4 years ago
Alternatives and similar repositories for ldshrink
Users that are interested in ldshrink are comparing it to the libraries listed below
Sorting:
- Effective Computing—Resources for Computational Biologists☆27Updated 5 years ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆29Updated last month
- Generalized linear Mixed Model Association Tests☆44Updated last month
- Statistical properties of polygenic risk scores☆19Updated 6 years ago
- ☆22Updated 8 years ago
- Learn and validate subtypes from multiple traits☆20Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 5 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Various multi-trait association tests in R☆11Updated 7 years ago
- GridLMM package☆39Updated 2 months ago
- An R package for multivariate adaptive shrinkage.☆91Updated last year
- Get SNP proxies from the 1000 Genomes Project.☆30Updated 7 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆33Updated 7 months ago
- ☆10Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 3 months ago
- Bayesian hierarchical model for complex trait analysis☆46Updated last year
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Updated 2 years ago
- QTL Discovery using Annotations☆28Updated 3 years ago
- ☆22Updated 3 months ago
- A matrix-like wrapper around PLINK .bed files☆19Updated last year
- Toy simulations and analyses of heritability and genetic differences☆11Updated last year
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Older repo for MRLocus. See new website for software usage guide:☆15Updated 2 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- Example data for R/qtl2☆13Updated 4 years ago
- Scripts for running a sibling GWAS☆16Updated 3 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Updated 2 years ago
- Every Gene Ever Annotated in published GWAS☆50Updated 3 years ago
- genetic correlation between phenotypes in the UK biobank☆13Updated last year