Alternatives and similar repositories for lab-docs

Users that are interested in lab-docs are comparing it to the libraries listed below

• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆51Updated 8 months ago
• JaeYoonKim72 / GMStool
  ☆17Updated 5 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆38Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆83Updated last year
• chunjie-sam-liu / useful-scripts
  common useful script
  ☆32Updated last month
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated last month
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated 2 weeks ago
• MVesuviusC / primerTree
  PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs
  ☆52Updated 3 weeks ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆35Updated last year
• whussain2 / Analysis-pipeline
  ☆35Updated 3 years ago
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆46Updated 7 months ago
• ANGSD / NgsRelate
  ☆44Updated 6 months ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated 2 weeks ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆38Updated 7 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆68Updated 5 years ago
• hemstrow / snpR
  ☆31Updated 3 weeks ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆45Updated last week
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• NBISweden / GUESSmyLT
  An efficient way to guess the library type of your RNA-Seq data.
  ☆32Updated 3 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆60Updated last month
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆24Updated 9 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• bcbc-group / Botany2020NMGWorkshop
  A repo for scripts and associated files for the Botany 2020 Virtual Nonmodel Genomics Workshop
  ☆15Updated 5 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 6 years ago