Alternatives and similar repositories for jupyter-cytoscape

Users that are interested in jupyter-cytoscape are comparing it to the libraries listed below

• jmvillaveces / biojs-vis-keggviewer
  renders a KEGGML file and displays a KEGG pathway
  ☆10Updated 9 years ago
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 10 years ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• waldronlab / GSEABenchmarkeR
  Reproducible GSEA Benchmarking
  ☆14Updated 3 months ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆49Updated 2 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• idekerlab / hiview
  HiView: the universal viewer for hierarchical data
  ☆16Updated 2 years ago
• biomart / BioMart
  ☆21Updated 9 years ago
• ISA-tools / mzml2isa
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure
  ☆12Updated last year
• JEFworks-Lab / R-style-guide
  Best practices for readable, sharable, and verifiable R code
  ☆18Updated 6 years ago
• kwanjeeraw / grinn
  a Graph database and R package for omic data integration
  ☆19Updated 9 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated 3 months ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• your-highness / normR
  Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.
  ☆11Updated 4 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆49Updated this week
• MaayanLab / FAIRshake
  ☆10Updated 5 months ago
• jfrelinger / fcm
  a python library for working with flow cytometry data.
  ☆14Updated 10 years ago
• NCBI-Hackathons / PubRunner
  Framework for running text mining tools on latest publications. Main page at:
  ☆14Updated 3 years ago
• caporaso-lab / cual-id
  A package for creating and managing sample identifiers in comparative -omics datasets.
  ☆23Updated 9 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ncbi / blast-cloud
  Documentation for NCBI BLAST AMI
  ☆11Updated 3 years ago
• biojs / biojs2galaxy
  A fast tool to convert BioJS components into Galaxy visualization plugins.
  ☆14Updated 5 years ago
• calipho-sib / nextprot-js
  JavaScript library that communicates with neXtProt API - From SIB CALIPHO group; neXtProt project
  ☆13Updated 2 years ago
• Rothamsted / knetminer
  KnetMiner - webapp to search and visualize genome-scale knowledge graphs
  ☆29Updated 4 months ago
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• ISA-tools / biopy-isatab
  Python parser for ISAtab, a biological file format for experimental metadata
  ☆16Updated 9 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 6 months ago