This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
☆16Jan 21, 2021Updated 5 years ago
Alternatives and similar repositories for Autotuner
Users that are interested in Autotuner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tool for automated Optimization of XCMS Parameters☆34Nov 27, 2022Updated 3 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Nov 13, 2018Updated 7 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Nov 10, 2025Updated 4 months ago
- R Interface to the Metabolights REST API☆11Aug 19, 2025Updated 7 months ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 7 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆13Updated this week
- data processing for MS-based metabolomics☆15Nov 10, 2024Updated last year
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated last year
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆34Aug 19, 2021Updated 4 years ago
- Relaunch of the initial MetFrag project.☆19Mar 9, 2026Updated 2 weeks ago
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- ☆17Apr 19, 2021Updated 4 years ago
- Flash entropy search☆16Sep 24, 2023Updated 2 years ago
- ☆12Jan 16, 2025Updated last year
- R Interface to the ClassyFire REST API☆12Feb 21, 2025Updated last year
- TidyMS: Tools for working with MS data in untargeted metabolomics☆61Jul 13, 2024Updated last year
- ☆12Jul 10, 2022Updated 3 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11May 6, 2025Updated 10 months ago
- On-instrument and post-acquisition targeted feature extraction☆13Sep 27, 2025Updated 5 months ago
- Nextflow-powered MS-DIAL☆12Jan 13, 2025Updated last year
- Retip - Retention Time prediction for metabolomics☆32Jun 6, 2024Updated last year
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- asari, metabolomics data preprocessing☆60Updated this week
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Rocker image for metabolomics data analysis☆13Oct 25, 2025Updated 4 months ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆24Apr 25, 2025Updated 10 months ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆15Feb 27, 2026Updated 3 weeks ago
- This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis☆219Updated this week
- FELLA: an R package for Metabolomics data enrichment through diffusion☆23Jan 23, 2026Updated 2 months ago
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 8 years ago
- MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and cover…☆23Mar 5, 2026Updated 2 weeks ago
- ☆11Feb 20, 2026Updated last month
- All the source code of MetDNA.☆20Mar 1, 2022Updated 4 years ago
- A collection of common mz values found in mass spectrometry.☆20Jun 13, 2024Updated last year
- MetEx is a tool to extract and annotate metabolites from liquid chromatography–mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆15Jun 1, 2023Updated 2 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆21Feb 14, 2021Updated 5 years ago