This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
☆16Jan 21, 2021Updated 5 years ago
Alternatives and similar repositories for Autotuner
Users that are interested in Autotuner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tool for automated Optimization of XCMS Parameters☆34Nov 27, 2022Updated 3 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Nov 13, 2018Updated 7 years ago
- R Interface to the Metabolights REST API☆11Jun 10, 2026Updated last month
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Nov 10, 2025Updated 8 months ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 4 years ago
- Relaunch of the initial MetFrag project.☆19Mar 9, 2026Updated 4 months ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆14May 28, 2026Updated last month
- R package for MetFrag☆24Sep 25, 2017Updated 8 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Apr 22, 2026Updated 3 months ago
- ☆17Apr 19, 2021Updated 5 years ago
- Flash entropy search☆18Sep 24, 2023Updated 2 years ago
- ☆13Jan 16, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated last year
- R Interface to the ClassyFire REST API☆15May 20, 2026Updated 2 months ago
- TidyMS: Tools for working with MS data in untargeted metabolomics☆62Jul 13, 2024Updated 2 years ago
- ☆12Jul 10, 2022Updated 4 years ago
- Retip - Retention Time prediction for metabolomics☆32Jun 6, 2024Updated 2 years ago
- Nextflow-powered MS-DIAL☆14May 30, 2026Updated last month
- On-instrument and post-acquisition targeted feature extraction☆13Apr 24, 2026Updated 2 months ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆10Sep 6, 2022Updated 3 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆25Jun 16, 2026Updated last month
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 9 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- FELLA: an R package for Metabolomics data enrichment through diffusion☆24Jan 23, 2026Updated 6 months ago
- Rocker image for metabolomics data analysis☆14Oct 25, 2025Updated 8 months ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Updated this week
- ☆12Feb 20, 2026Updated 5 months ago
- All the source code of MetDNA.☆20Mar 1, 2022Updated 4 years ago
- asari, metabolomics data preprocessing☆68Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆17Mar 9, 2024Updated 2 years ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆29May 22, 2026Updated 2 months ago
- Intrinsic Peak Analysis (IPA) pipeline for peak-picking in large-scale untargeted small molecule analysis including metabolomics, lipidom…☆16Jun 1, 2023Updated 3 years ago
- MetEx is a tool to extract and annotate metabolites from liquid chromatography –mass spectrometry data.☆18Nov 14, 2023Updated 2 years ago
- A collection of common mz values found in mass spectrometry.☆21Jun 13, 2024Updated 2 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆22Feb 14, 2021Updated 5 years ago
- Knowledge-guided multilayer network approach is executed in MetDNA2☆16Nov 5, 2022Updated 3 years ago