This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
☆16Jan 21, 2021Updated 5 years ago
Alternatives and similar repositories for Autotuner
Users that are interested in Autotuner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆16Nov 13, 2018Updated 7 years ago
- A Tool for automated Optimization of XCMS Parameters☆34Nov 27, 2022Updated 3 years ago
- R Interface to the Metabolights REST API☆12Jun 10, 2026Updated 4 months ago
- Mass Spec Query Language (MassQL) support for Spectra☆10Apr 30, 2026Updated 6 months ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆19Nov 10, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- NeatMS is an open source python package for untargeted LCMS signal labelling and filtering.☆35Aug 19, 2021Updated 5 years ago
- data processing for MS-based metabolomics☆15May 28, 2026Updated 5 months ago
- A processing pipeline for the summarization, normalization and diagnostics of mass spectrometry–based metabolomics data.☆10Jan 17, 2026Updated 9 months ago
- Relaunch of the initial MetFrag project.☆20Mar 9, 2026Updated 7 months ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- Flash entropy search☆18Sep 24, 2023Updated 3 years ago
- Clustering of MS² Spectra for Metabolite Identification☆10Apr 2, 2022Updated 4 years ago
- R package for MetFrag☆24Sep 25, 2017Updated 9 years ago
- Package to perform annotations of features from LC-MS All-ion fragmentation (AIF) metabolomics datasets☆16Sep 11, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R interface to Chemical Translation Service (CTS)☆17Jul 27, 2024Updated 2 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆12Oct 7, 2026Updated 3 weeks ago
- OUKS - Omics Untargeted Key Script☆10Jul 21, 2026Updated 3 months ago
- Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the pack…☆20Oct 17, 2018Updated 8 years ago
- ☆13Jan 16, 2025Updated last year
- TidyMS: Tools for working with MS data in untargeted metabolomics☆63Jul 13, 2024Updated 2 years ago
- A bioinformatic tool facilitating automated in-source fragmentation identification☆11Sep 6, 2022Updated 4 years ago
- ☆12Jul 10, 2022Updated 4 years ago
- Group-DIA, a software for analyzing multiple DIA data files☆13Dec 5, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- On-instrument and post-acquisition targeted feature extraction☆13Updated this week
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆16Apr 19, 2017Updated 9 years ago
- Retip - Retention Time prediction for metabolomics☆33Jun 6, 2024Updated 2 years ago
- ☆17Apr 19, 2021Updated 5 years ago
- metabolomics/lipidomics data processing☆10Feb 17, 2021Updated 5 years ago
- IsoCor: Isotope Correction for mass spectrometry labeling experiments☆26Jun 16, 2026Updated 4 months ago
- Nextflow-powered MS-DIAL☆15May 30, 2026Updated 5 months ago
- Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabo…☆13Oct 21, 2026Updated last week
- FELLA: an R package for Metabolomics data enrichment through diffusion☆25Jan 23, 2026Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nearest neighbor suspect spectral library for untargeted metabolomics.☆10Aug 25, 2023Updated 3 years ago
- R Interface to the ClassyFire REST API☆15Aug 21, 2026Updated 2 months ago
- A Pipeline for LC-MS/MS Metabolomics Data Process and Analysis☆17Updated this week
- Rocker image for metabolomics data analysis☆14Updated this week
- G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics☆18Mar 9, 2024Updated 2 years ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆29May 22, 2026Updated 5 months ago
- asari, metabolomics data preprocessing☆69Updated this week