KujawinskiLaboratory / Autotuner
This repo contains the code needed to run the R package Autotuner. Autotuner is used to identify proper parameters during metabolomics data processing.
☆16Updated 4 years ago
Alternatives and similar repositories for Autotuner:
Users that are interested in Autotuner are comparing it to the libraries listed below
- R package for MetFrag☆24Updated 7 years ago
- Core Utils for Mass Spectrometry Data☆16Updated 3 months ago
- On-instrument and post-acquisition targeted feature extraction☆12Updated 8 months ago
- A collection of common mz values found in mass spectrometry.☆19Updated 8 months ago
- Interactive software to analyze and browse mass spectrometry data☆21Updated last year
- QC systems for metabolomics studies☆10Updated 2 months ago
- Core utilities for metabolomics.☆9Updated 4 months ago
- Metabolomics Tools for Galaxy☆21Updated 8 years ago
- data processing for MS-based metabolomics☆15Updated 3 months ago
- These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconduc…☆19Updated 6 months ago
- Assigning precursor-product ion relationships in indiscriminant MS/MS data☆12Updated 8 months ago
- The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.☆33Updated 3 years ago
- This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data☆11Updated 10 months ago
- ☆11Updated 2 years ago
- Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …☆15Updated 6 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆36Updated 9 months ago
- Construct database and identify metabolites.☆5Updated 2 years ago
- This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…☆44Updated this week
- Create .mzML files through the R Console☆11Updated 3 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆10Updated last month
- Chemical Similarity Enrichment analysis of metabolomics datasets☆27Updated 6 months ago
- Tool for reliability assessment of omics peprocessing☆10Updated 11 months ago
- TimsR: Easy access to timsTOF Pro data from R.☆9Updated 3 years ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆25Updated last year
- metabolite identification R-package for metabolomic high-resolution LC-MS datasets.☆14Updated 7 years ago
- Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of m…☆15Updated last year
- R Interface to the Metabolights REST API☆10Updated 11 months ago
- Shiny app for retention time prediction☆9Updated 5 years ago
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆38Updated this week