dooguypapua / eKLIPseLinks
a tool for predicting mitochondrial DNA deletions using soft-clipping
☆22Updated 3 years ago
Alternatives and similar repositories for eKLIPse
Users that are interested in eKLIPse are comparing it to the libraries listed below
Sorting:
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆51Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated 2 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆22Updated 5 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆40Updated 8 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- CN-Learn☆29Updated 5 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- ☆39Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last month
- ☆46Updated 5 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 3 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆15Updated 5 months ago