arq5x / bedtools-protocolsLinks
☆78Updated 11 years ago
Alternatives and similar repositories for bedtools-protocols
Users that are interested in bedtools-protocols are comparing it to the libraries listed below
Sorting:
- An awk-like VCF parser☆56Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Toolkit for processing TAB-delimited format☆62Updated 10 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- BigWig and BAM utilities☆97Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 10 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- ☆95Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated this week
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- ☆82Updated 3 years ago