RKMlab / perfLinks
PERF is an Exhaustive Repeat Finder
☆33Updated 4 years ago
Alternatives and similar repositories for perf
Users that are interested in perf are comparing it to the libraries listed below
Sorting:
- A dotplot generator for large chromosomes☆43Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last week
- ☆28Updated 3 years ago
- for visual evaluation of read support for structural variation☆56Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 3 weeks ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated last year
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- Structural variant caller☆55Updated 4 years ago
- A python package and a set of shell commands to handle GTF files☆50Updated 2 weeks ago
- Find Unique genomic Regions☆32Updated last week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 11 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated 2 months ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Fully automated generation of UCSC assembly hubs☆35Updated last year