Accurate microsatellite genotypes from high-throughput resequencing data
☆24Sep 26, 2014Updated 11 years ago
Alternatives and similar repositories for repeatseq
Users that are interested in repeatseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Jun 29, 2020Updated 5 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 5 months ago
- The gkno launcher for executing tools or pipelines☆31Jan 17, 2017Updated 9 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆101Feb 27, 2023Updated 3 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Reference files for running HipSTR with various organisms☆17Feb 3, 2018Updated 8 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 6 years ago
- ☆12Apr 21, 2023Updated 2 years ago
- Ultra Fast NGS Data QC Tool☆28Feb 14, 2021Updated 5 years ago
- Toolkit for calling and analyzing de novo STR mutations☆17Dec 17, 2023Updated 2 years ago
- lobSTR: a short tandem repeat profiler for next generation sequencing data☆54Oct 12, 2023Updated 2 years ago
- ☆13Mar 1, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆31May 10, 2021Updated 4 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Dec 6, 2013Updated 12 years ago
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆13May 11, 2023Updated 2 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Feb 19, 2021Updated 5 years ago
- An insertion caller for Illumina paired-end WGS data.☆24Aug 22, 2025Updated 7 months ago
- Optimization of a Haplotype PairHMM class for GPU processing☆24Jan 31, 2017Updated 9 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆39May 21, 2024Updated last year
- ☆23Sep 21, 2021Updated 4 years ago
- ☆29Mar 5, 2024Updated 2 years ago
- Code for building and testing variant ranking strategies☆17Aug 22, 2025Updated 7 months ago
- This is an official replacement for https://bitbucket.org/feeldead/gfold☆10Aug 30, 2020Updated 5 years ago
- Analyze and simulate Pool-Seq time series data☆17Jun 16, 2022Updated 3 years ago
- A tool for profiling long STRs from short reads☆105Apr 19, 2021Updated 4 years ago
- Generate statistics from FASTQ and FASTA files. Also manipulate sequences such as renaming/sorting contigs and converting FASTQ to FASTA.…☆16Feb 3, 2026Updated last month
- My first JEKYLL-THEME☆14Jul 23, 2016Updated 9 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆11Apr 5, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- A tool for estimating repeat sizes☆207Jan 30, 2024Updated 2 years ago
- This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).☆15May 9, 2019Updated 6 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- Chrome extension that inserts a custom stylesheet and script into every web page.☆11Jul 16, 2019Updated 6 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago