Alternatives and similar repositories for NMF

Users that are interested in NMF are comparing it to the libraries listed below

• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆80Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated last month
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 6 months ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆92Updated 7 months ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated last year
• nolanlab / citrus
  Citrus Development Code
  ☆31Updated last year
• RGLab / flowWorkspace
  flowWorkspace
  ☆45Updated 3 months ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆80Updated 3 weeks ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆79Updated last month
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated last month
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆37Updated 5 months ago
• StoreyLab / qvalue
  R package to estimate q-values and false discovery rate quantities.
  ☆117Updated last year
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆38Updated this week
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆64Updated this week
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• js229 / Vennerable
  Vennerable provides Venn diagrams in R. It displays Venn and Euler diagrams for up to 9 different sets and using a variety of geometries.…
  ☆91Updated 4 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆92Updated this week
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆79Updated 4 years ago
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆84Updated last year
• Shians / Glimma
  Glimma R package
  ☆50Updated 9 months ago
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆106Updated last year
• JohnReid / DeLorean
  R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…
  ☆15Updated 3 years ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆160Updated 11 months ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆59Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆59Updated last year
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago