Alternatives and similar repositories for NMF:

Users that are interested in NMF are comparing it to the libraries listed below

• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 5 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆79Updated 9 months ago
• nolanlab / citrus
  Citrus Development Code
  ☆31Updated 10 months ago
• RGLab / flowWorkspace
  flowWorkspace
  ☆45Updated 11 months ago
• crj32 / M3C
  Monte Carlo Reference-based Consensus Clustering
  ☆36Updated 4 years ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆67Updated last week
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆71Updated 3 weeks ago
• willtownes / glmpca
  ☆94Updated 10 months ago
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆37Updated 3 weeks ago
• lazappi / clustree
  Visualise Clusterings at Different Resolutions
  ☆219Updated last year
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 2 months ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated last year
• Bohdan-Khomtchouk / shinyheatmap
  Web application for enormous biological heatmaps
  ☆63Updated 4 years ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆90Updated 3 weeks ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆72Updated last week
• VPetukhov / ggrastr
  Raster geoms for ggplot2
  ☆220Updated last year
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆104Updated 11 months ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆61Updated last month
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆56Updated 2 months ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 8 months ago
• RGLab / ggcyto
  Visualize Cytometry data with ggplot2
  ☆57Updated last year
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆91Updated 3 months ago
• nolanlab / spade
  SPADE: Spanning Tree Progression of Density Normalized Events
  ☆48Updated 8 years ago
• Bioconductor / BiocStickers
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.
  ☆125Updated 3 weeks ago
• TomKellyGenetics / leiden
  Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
  ☆38Updated 9 months ago
• StoreyLab / qvalue
  R package to estimate q-values and false discovery rate quantities.
  ☆115Updated last year
• RGLab / flowCore
  Core flow cytometry infrastructure
  ☆47Updated 6 months ago
• RGLab / ImmuneSpaceR
  An R Interface to the ImmuneSpace database portal
  ☆24Updated last year
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆82Updated 9 months ago