renozao / NMF

Related projects ⓘ

Alternatives and complementary repositories for NMF

• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• rnabioco / valr
  Genome Interval Arithmetic in R
  ☆89Updated last month
• nolanlab / citrus
  Citrus Development Code
  ☆31Updated 7 months ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆70Updated last year
• lazappi / clustree
  Visualise Clusterings at Different Resolutions
  ☆217Updated last year
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆70Updated this week
• raivokolde / pheatmap
  Pretty heatmaps
  ☆238Updated last year
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆37Updated 9 months ago
• KrishnaswamyLab / phateR
  PHATE dimensionality reduction method implemented in R
  ☆77Updated 3 years ago
• linxihui / NNLM
  Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
  ☆76Updated 6 months ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆40Updated 6 months ago
• stemangiola / tidyseurat
  Seurat meets tidyverse. The best of both worlds.
  ☆157Updated 3 months ago
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆80Updated 6 months ago
• nolanlab / spade
  SPADE: Spanning Tree Progression of Density Normalized Events
  ☆47Updated 8 years ago
• VPetukhov / ggrastr
  Raster geoms for ggplot2
  ☆215Updated last year
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆88Updated 2 weeks ago
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last week
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆60Updated 2 weeks ago
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆47Updated 4 years ago
• StoreyLab / qvalue
  R package to estimate q-values and false discovery rate quantities.
  ☆112Updated last year
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• federicomarini / pcaExplorer
  pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
  ☆55Updated last month
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 5 years ago
• hansenlab / minfi
  Devel repository for minfi
  ☆60Updated 6 months ago
• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆165Updated this week
• const-ae / tidygenomics
  Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/
  ☆102Updated 3 years ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆77Updated 2 weeks ago
• tkonopka / umap
  Uniform Manifold Approximation and Projection - R package
  ☆132Updated 6 months ago
• Bioconductor / BiocParallel
  Bioconductor facilities for parallel evaluation
  ☆67Updated 3 weeks ago
• cran / WGCNA
   This is a read-only mirror of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis
  ☆49Updated 2 months ago