areyesq89 / SummarizedBenchmark
SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for SummarizedBenchmark
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 6 months ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆37Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last week
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 6 months ago
- Code for the Recount project☆11Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 3 weeks ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- Independent Hypothesis Weighting☆15Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Devel repository for minfi☆60Updated 6 months ago
- Reproducible GSEA Benchmarking☆13Updated 3 weeks ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆30Updated 2 years ago
- Various Ideas for Confounder Adjustment in Regression☆23Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Gene-level general linear mixed model☆18Updated 2 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆30Updated this week
- Glimma R package☆50Updated 2 months ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Course website for Genomic Data Visualization 2024☆22Updated 8 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆21Updated this week
- Take command of your set enrichment analyses.☆20Updated this week
- R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases☆19Updated this week