areyesq89 / SummarizedBenchmarkLinks
SummarizedBenchmark defines a flexible framework for benchmarking computational methods in R.
☆15Updated 4 years ago
Alternatives and similar repositories for SummarizedBenchmark
Users that are interested in SummarizedBenchmark are comparing it to the libraries listed below
Sorting:
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Modular & interactive analysis components for bioinformatics☆18Updated last month
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Updated 2 years ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- Template for building a bioconductor workshop package using github actions☆21Updated 5 months ago
- The blog of tidyomics☆14Updated 5 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 3 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- [DEPRECATED] An R package for Google Genomics API queries.☆45Updated 2 years ago
- Helper script for bioconductor/bioconductor_docker☆13Updated 8 months ago
- Onboarding materials for the Greene Lab☆31Updated 3 weeks ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 5 years ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago
- This python package is for transitioning bioconductor from SVN to git☆14Updated 2 years ago
- A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.☆19Updated 7 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- Glimma R package☆50Updated last year
- Automate package and project setup for Bioconductor packages☆54Updated 8 months ago
- BioC2020: Where Software and Biology Connect☆12Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19Updated 5 years ago
- Bioconductor package for management of multi-assay data☆74Updated 3 weeks ago