Alternatives and similar repositories for NNLM:

Users that are interested in NNLM are comparing it to the libraries listed below

• dynverse / dynplot
  Visualising single-cell trajectories, including comparisons between two models 📈
  ☆30Updated 3 years ago
• AlineTalhouk / diceR
  Diverse Cluster Ensemble in R
  ☆37Updated 11 months ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆91Updated 2 months ago
• stephenslab / fastTopics
  Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.
  ☆79Updated last month
• willtownes / glmpca
  ☆94Updated 9 months ago
• SaskiaFreytag / schex
  ☆74Updated 11 months ago
• const-ae / sparseMatrixStats
  Implementation of the matrixStats API for sparse matrices
  ☆54Updated 7 months ago
• pkimes / sigclust2
  tests for statistical significance of clustering
  ☆37Updated 6 years ago
• traversc / trqwe
  Performance oriented statistical metrics and utility functions in R
  ☆29Updated 4 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆37Updated last month
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆25Updated last year
• NightingaleHealth / ggforestplot
  An R package to create forestplots of measures of effects with their confidence intervals.
  ☆57Updated 3 years ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆50Updated 4 years ago
• crj32 / M3C
  Monte Carlo Reference-based Consensus Clustering
  ☆36Updated 4 years ago
• dynverse / dynwrap
  A common data format and inference environment for single-cell trajectories 📦
  ☆15Updated last year
• willwerscheid / flashier
  A faster and angrier package for EBMF.
  ☆11Updated this week
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated last month
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆38Updated last year
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆103Updated 10 months ago
• lucylgao / clusterpval
  ☆16Updated last year
• LTLA / SingleCellThoughts
  Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
  ☆44Updated 4 years ago
• yanwu2014 / swne
  Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
  ☆105Updated last year
• HenrikBengtsson / git-bioc
  LEGACY: Git commands to keep a Git repository and Bioconductor SVN in sync
  ☆10Updated 8 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆70Updated this week
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆30Updated last year
• pwwang / plotthis
  plotthis is an R package that is built upon ggplot2 and other plotting packages.
  ☆34Updated 2 weeks ago
• RTCGA / RTCGA
  Download, integration and visualizations of the variety & volume of TCGA data.
  ☆51Updated 2 years ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated 9 months ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 5 years ago