linxihui / NNLM
Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).
☆75Updated 4 months ago
Related projects: ⓘ
- ☆92Updated 5 months ago
- ☆72Updated 7 months ago
- An R package for multivariate adaptive shrinkage.☆88Updated 11 months ago
- Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more☆93Updated 6 months ago
- Monte Carlo Reference-based Consensus Clustering☆36Updated 4 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 2 months ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆30Updated 2 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆25Updated last year
- Diverse Cluster Ensemble in R☆34Updated 7 months ago
- Implementation of the matrixStats API for sparse matrices☆54Updated 3 months ago
- Infrastructure for Ordering using Seriation - R Package☆74Updated 3 weeks ago
- tests for statistical significance of clustering☆35Updated 5 years ago
- Mixed models @lme4 + custom covariances + parameter constraints☆48Updated 3 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆40Updated 3 months ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆37Updated 11 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆56Updated 3 months ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆54Updated last week
- Implementation of the Leiden algorithm called by reticulate in R. (CRAN)☆36Updated 3 months ago
- An R package for adaptive shrinkage☆79Updated 4 months ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆103Updated last year
- R interface to morpheus.js heatmap widget☆37Updated 3 years ago
- ☆31Updated this week
- LASSO for GWAS with summary statistics☆71Updated 3 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated last month
- A faster and angrier package for EBMF.☆10Updated last month
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆20Updated 7 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆45Updated 4 years ago
- R pkg for Hierarchical Dirichlet Process☆73Updated last year
- An R package to create forestplots of measures of effects with their confidence intervals.☆55Updated 3 years ago