Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
☆39Mar 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for pyfamsa
Users that are interested in pyfamsa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 weeks ago
- Cython bindings and Python interface to HMMER3.☆160Mar 17, 2026Updated 3 weeks ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆225Mar 23, 2026Updated 3 weeks ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆62Mar 25, 2026Updated 2 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆24Mar 7, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆181Mar 17, 2026Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24Apr 2, 2026Updated last week
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 5 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Protein structure alignment and search algorithm☆80Updated this week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 4 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆57Mar 27, 2026Updated 2 weeks ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 4 months ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆26Jan 25, 2025Updated last year
- Nail is an Alignment Inference tooL☆54Updated this week
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆40Jan 12, 2024Updated 2 years ago
- Detection of remote homology by comparison of protein language model representations☆61Dec 16, 2024Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Updated this week
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆18Apr 5, 2026Updated last week
- ☆134Aug 29, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆248Oct 12, 2025Updated 6 months ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆23Apr 20, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- sensitive and precise assembly of short sequencing reads☆165Oct 11, 2024Updated last year
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆38Jan 21, 2026Updated 2 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆190Dec 1, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Phage Annotation using Protein Structures☆156Updated this week
- A python library for efficient KNN search within metric spaces using multiple distance functions.☆27Mar 30, 2026Updated 2 weeks ago
- Fast DNA manipulation for Rust and Python☆64Mar 10, 2026Updated last month