Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
☆46Mar 24, 2026Updated 7 months ago
Alternatives and similar repositories for pyfamsa
Users that are interested in pyfamsa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆28Mar 25, 2026Updated 7 months ago
- Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.☆11Mar 25, 2026Updated 7 months ago
- Algorithm for ultra-scale multiple protein sequence alignments: 3 million ABC transporters analyzed in 5 minutes and 18 GB of RAM.☆278Sep 10, 2026Updated last month
- Cython bindings and Python interface to HMMER3.☆172Oct 19, 2026Updated 2 weeks ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆25Mar 7, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆64Mar 25, 2026Updated 7 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 7 months ago
- Approximate UniFrac via Weighted MinHash 🦀☆13Updated this week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated 2 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Updated this week
- PHANOTATE: a gene caller for phages.☆95Dec 2, 2024Updated last year
- Protein structure alignment and search algorithm☆102Sep 9, 2026Updated last month
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 5 months ago
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Sep 29, 2020Updated 6 years ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated 2 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Nail is an Alignment Inference tooL☆71Updated this week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 11 months ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- Build protein families from sequence clusters by iterative HMM search over very large databases — streaming, deterministic, pyHMMER-based…☆12Sep 28, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated last year
- Just another minhash implementation.☆13Oct 23, 2026Updated last week
- ☆25Sep 22, 2026Updated last month
- SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)☆41Jan 12, 2024Updated 2 years ago
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated last month
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆68Sep 14, 2024Updated 2 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆205Dec 1, 2024Updated last year
- Efficient phylogenetic tree inference for massive taxonomic datasets☆148Apr 6, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆60Sep 13, 2026Updated last month
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆30Updated this week
- ☆140Aug 29, 2024Updated 2 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆25Jul 22, 2026Updated 3 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated 2 years ago