Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/personal/dalia_barkley_nyulangone_org/EuHetdAOc2pLjm9XUwqdWicBnlXIbyvHx-EOC-inP-SGUg?e=rxa7Ry
☆31Aug 17, 2022Updated 3 years ago
Alternatives and similar repositories for PanCancer
Users that are interested in PanCancer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆63Dec 27, 2023Updated 2 years ago
- ☆51Feb 16, 2022Updated 4 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆133Sep 24, 2024Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- ☆21Dec 23, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆28Jan 15, 2024Updated 2 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Oct 29, 2024Updated last year
- ☆15Oct 10, 2023Updated 2 years ago
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated last year
- ☆22Mar 6, 2023Updated 3 years ago
- ☆17Sep 13, 2023Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- Integration of gut cell atlases☆35May 6, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆58Aug 8, 2024Updated last year
- Repository for codes for the HBCA paper☆42Mar 17, 2023Updated 3 years ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- ☆58Feb 23, 2024Updated 2 years ago
- ☆131Mar 27, 2022Updated 4 years ago
- These are scripts for pan-cacner B cells analyses.☆59Jul 22, 2024Updated last year
- Accurate and fast cell marker gene identification with COSG☆66Feb 8, 2026Updated 4 months ago
- ☆37Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Nov 5, 2024Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Dec 7, 2022Updated 3 years ago
- ☆32Jan 3, 2025Updated last year
- ☆12Jun 11, 2023Updated 2 years ago
- ☆26Aug 24, 2023Updated 2 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12May 13, 2021Updated 5 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆290May 31, 2026Updated last week
- A package for the analysis of Imaging Mass Cytometry data☆15Mar 25, 2026Updated 2 months ago
- Spatial transcriptomics of heart tissue☆28Jun 16, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- ☆13Jun 18, 2018Updated 7 years ago
- ☆11May 24, 2024Updated 2 years ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year