Spatially-aware quality control for spatial transcriptomics
☆17Sep 8, 2026Updated last month
Alternatives and similar repositories for SpotSweeper
Users that are interested in SpotSweeper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆18Jul 6, 2026Updated 3 months ago
- ☆12May 24, 2024Updated 2 years ago
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 6 months ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Cell segmentation☆22Jul 6, 2026Updated 3 months ago
- BANKSY: spatial clustering☆165Sep 29, 2026Updated last week
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 4 months ago
- Cluster Identity Predictor (R package implementation)☆22Aug 13, 2026Updated last month
- ☆17Sep 13, 2024Updated 2 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Extension of SpatialExperiment with sf☆58Sep 26, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Learning notes for DBiT-Notes☆12Nov 28, 2024Updated last year
- ☆16Sep 29, 2023Updated 3 years ago
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆15May 12, 2026Updated 4 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Join subcellular Visium HD bins into cells☆144Sep 14, 2026Updated 3 weeks ago
- ☆27Jul 2, 2024Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆24Mar 29, 2023Updated 3 years ago
- ☆105May 4, 2026Updated 5 months ago
- ☆47Nov 26, 2025Updated 10 months ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆22Jul 19, 2022Updated 4 years ago
- 基于FPGA实现的流水灯项目☆10Mar 19, 2018Updated 8 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆295Sep 15, 2026Updated 3 weeks ago
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Image processing pipeline for spatial projects☆18Aug 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆54Mar 7, 2023Updated 3 years ago
- Profile purification of single-cell spatial transcriptomics data☆61Jun 29, 2026Updated 3 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆69Mar 18, 2024Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆18Sep 16, 2026Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆36Apr 13, 2021Updated 5 years ago
- Pipeline to predict off-target binding via probe sequences☆16Mar 13, 2026Updated 6 months ago