Spatially-aware quality control for spatial transcriptomics
☆17Oct 16, 2026Updated last week
Alternatives and similar repositories for SpotSweeper
Users that are interested in SpotSweeper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆15Mar 13, 2026Updated 7 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆18Jul 6, 2026Updated 3 months ago
- Cell segmentation☆22Jul 6, 2026Updated 3 months ago
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- ☆12May 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cluster Identity Predictor (R package implementation)☆22Aug 13, 2026Updated 2 months ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆20Sep 29, 2026Updated 3 weeks ago
- ☆13Oct 9, 2026Updated 2 weeks ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Single-cell analysis with non-negative matrix factorization☆50Oct 17, 2026Updated last week
- ☆14Nov 12, 2025Updated 11 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BANKSY: spatial clustering☆170Sep 29, 2026Updated last month
- Interactive design and validation of antibody panels using single-cell atlases | https://cytomarker.ai☆17Oct 8, 2026Updated 3 weeks ago
- TOAST: Spatially Aware Optimal Transport for Alignment of Spatial Omics Data☆17Apr 9, 2026Updated 6 months ago
- Extension of SpatialExperiment with sf☆58Oct 22, 2026Updated last week
- H&E to Xenium SIFT-based Alignment (HEX-SIFT). Automatic alignment of H&E images to a dapi image. Used for H&E alignment to Xenium dapi i…☆13Oct 13, 2026Updated 2 weeks ago
- Segmentation-free Analysis of In Situ Capture data☆15Oct 7, 2026Updated 3 weeks ago
- ☆105May 4, 2026Updated 5 months ago
- ☆17Sep 13, 2024Updated 2 years ago
- ☆13Sep 15, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Mar 20, 2021Updated 5 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated last week
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- RIDDEN command-line interface: Data-driven inference of receptor activity for cell-cell communication studies☆14Mar 29, 2025Updated last year
- Learning notes for DBiT-Notes☆12Nov 28, 2024Updated last year
- ☆17Sep 29, 2023Updated 3 years ago
- Profile purification of single-cell spatial transcriptomics data☆67Jun 29, 2026Updated 4 months ago
- ☆47Jun 1, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆26Jul 2, 2024Updated 2 years ago
- Spatial One☆32Oct 31, 2024Updated last year
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- ☆48Nov 26, 2025Updated 11 months ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- 基于FPGA实现的流水灯项目☆10Mar 19, 2018Updated 8 years ago