primer3-org / primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
☆245Updated 5 months ago
Alternatives and similar repositories for primer3:
Users that are interested in primer3 are comparing it to the libraries listed below
- Simple oligo analysis and primer design☆176Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆402Updated 3 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆258Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆393Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆500Updated last year
- TransDecoder source☆288Updated 6 months ago
- Mummer alignment tool☆492Updated last month
- Fast genome-wide functional annotation through orthology assignment☆603Updated 10 months ago
- GFF and GTF file manipulation and interconversion☆298Updated 11 months ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆238Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆340Updated 3 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated 2 months ago
- the pangenome graph builder☆420Updated last month
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆275Updated last week
- Genome annotation with AUGUSTUS☆296Updated 2 months ago
- Genome-scale protein function classification☆320Updated this week
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆591Updated 2 weeks ago
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- ☆240Updated 10 months ago
- Fast and accurate de novo assembler for long reads☆384Updated 10 months ago
- Using Deep Learning to predict gene annotations☆185Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆300Updated this week
- A genome visualization python package for comparative genomics☆318Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 3 weeks ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆215Updated this week
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆159Updated 2 weeks ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Align proteins to genomes with splicing and frameshift☆356Updated last week
- Transcript assembly and quantification for RNA-Seq☆429Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆214Updated 8 months ago