Alternatives and similar repositories for primer3:

Users that are interested in primer3 are comparing it to the libraries listed below

• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆314Updated last week
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆173Updated this week
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆591Updated 9 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆400Updated 2 months ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆309Updated last month
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆377Updated last year
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆174Updated this week
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆254Updated 2 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆112Updated 10 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆157Updated last month
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆382Updated last month
• usadellab / Trimmomatic
  ☆235Updated 9 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆539Updated 7 months ago
• ucscGenomeBrowser / kent
  UCSC Genome Browser source tree. Stable branch: "beta".
  ☆230Updated this week
• mummer4 / mummer
  Mummer alignment tool
  ☆487Updated last month
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆415Updated 2 weeks ago
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆304Updated 4 months ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆567Updated 6 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆244Updated 3 months ago
• iqtree / iqtree2
  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
  ☆269Updated this week
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆183Updated this week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆333Updated last month
• saketkc / pysradb
  Package for fetching metadata and downloading data from SRA/ENA/GEO
  ☆322Updated 2 weeks ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆224Updated 7 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆233Updated 2 months ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆383Updated 2 months ago
• weberlab-hhu / Helixer
  Using Deep Learning to predict gene annotations
  ☆181Updated last week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆337Updated 7 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆262Updated last month
• TransDecoder / TransDecoder
  TransDecoder source
  ☆285Updated 5 months ago