Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
☆285May 14, 2025Updated 11 months ago
Alternatives and similar repositories for primer3
Users that are interested in primer3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Primer3Plus is an advanced web interface for primer3.☆46Apr 26, 2025Updated last year
- Simple oligo analysis and primer design☆190Jan 26, 2026Updated 3 months ago
- PCR Primer Quality Control☆72Sep 29, 2025Updated 7 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Primer3Web is a simple web interface to primer3.☆17Aug 18, 2021Updated 4 years ago
- ThermoAlign: software for automated primer design☆27Apr 14, 2018Updated 8 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencing☆54Apr 7, 2026Updated last month
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated 2 months ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆82Dec 5, 2022Updated 3 years ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- Retrieve sequences flanked by an arbitrary number of primers from a nucleotide collection.☆11Jun 11, 2021Updated 4 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆34May 23, 2024Updated last year
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆53Oct 28, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- Cutadapt removes adapter sequences from sequencing reads☆580Apr 6, 2026Updated last month
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2018Updated 7 years ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,545Apr 23, 2026Updated 2 weeks ago
- A fast multi-threaded k-mer counter☆538Mar 20, 2024Updated 2 years ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,351Apr 24, 2026Updated last week
- Development version of Easyfig☆107Dec 21, 2023Updated 2 years ago
- Tools to process and analyze deep sequencing data.☆759Jul 23, 2025Updated 9 months ago
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆47Apr 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 9 months ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆224Updated this week
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆100Aug 31, 2022Updated 3 years ago
- Mummer alignment tool☆558Feb 4, 2025Updated last year
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated 11 months ago
- ☆12Dec 26, 2018Updated 7 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,166Apr 25, 2026Updated last week
- ☆34Apr 25, 2022Updated 4 years ago
- Toolkit for processing sequences in FASTA/Q formats☆1,539Jun 1, 2025Updated 11 months ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 5 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- design common and specific primer for LAMP using the whole genome☆15Feb 12, 2026Updated 2 months ago
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 5 months ago