davidhoover / DNAWorksLinks
Automatic oligonucleotide design for PCR-based gene synthesis
☆46Updated 5 years ago
Alternatives and similar repositories for DNAWorks
Users that are interested in DNAWorks are comparing it to the libraries listed below
Sorting:
- Mutation effects predicted from sequence co-variation☆66Updated 7 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆88Updated last year
- A domain parser for Alphafold models☆38Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆43Updated 3 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated 2 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆57Updated 6 months ago
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆23Updated last year
- ☆40Updated 9 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Multi-class signal peptide prediction and structure decoding model.☆87Updated 4 months ago
- Protein 3D structure prediction pipeline☆81Updated 2 weeks ago
- Feature map and function annotation of Proteins☆33Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆133Updated 6 months ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated last month
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆73Updated 2 weeks ago
- ☆49Updated 2 months ago
- Evolutionary velocity with protein language models☆93Updated last year
- Fast protein domain structure embedding+search tool☆21Updated last month
- A tool for protein and protein complex structure prediction.☆29Updated last week
- a pipeline to build similarity maps of protein space☆35Updated 6 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆33Updated 2 months ago
- Fast protein structure searching or your money back☆103Updated 2 months ago
- OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."☆33Updated this week
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆38Updated 9 months ago
- ☆36Updated this week
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆39Updated this week
- Fast and accurate protein structure prediction☆53Updated 5 months ago