Alternatives and similar repositories for pydna

Users that are interested in pydna are comparing it to the libraries listed below

• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 7 months ago
• jclachance / BOFdat
  Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
  ☆27Updated 2 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆108Updated 3 months ago
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆122Updated 3 years ago
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆63Updated 6 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆134Updated 4 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆110Updated 5 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆206Updated 6 months ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated last year
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆114Updated last week
• IsaacLuo / SnapGeneFileReader
  A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
  ☆44Updated 5 years ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆143Updated 3 months ago
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆110Updated 5 years ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆289Updated 5 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆257Updated 2 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆157Updated 2 years ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆90Updated 2 weeks ago
• yachielab / QUEEN
  QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources
  ☆45Updated 2 weeks ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 3 years ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆85Updated 6 years ago
• Edinburgh-Genome-Foundry / DnaChisel
  A versatile DNA sequence optimizer
  ☆256Updated last month
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆119Updated 3 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆168Updated last year
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆323Updated last week
• ebi-webcomponents / nightingale
  Data visualisation web components for the life sciences.
  ☆138Updated last month
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆79Updated 2 weeks ago
• hiyama341 / teemi
  teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …
  ☆42Updated this week
• OrensteinLab / DeCoDe
  Degenerate Codon Design
  ☆13Updated 5 years ago
• zakandrewking / escher
  Build, share, and embed visualizations of metabolic pathways.
  ☆228Updated last year