pydna-group / pydnaLinks
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
☆200Updated last week
Alternatives and similar repositories for pydna
Users that are interested in pydna are comparing it to the libraries listed below
Sorting:
- WebLogo 3: Sequence Logos redrawn☆152Updated 4 months ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Webserver and command line tool for annotating engineered plasmids☆130Updated 2 months ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- nucleic acid folding☆102Updated last month
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- Software for the visualization of sequence-function relationships☆201Updated 3 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated 3 months ago
- The consensus GEM for Saccharomyces cerevisiae☆112Updated last week
- A Python project to read and write Snapgene *.dna into dict, json, and biopython object.☆44Updated 4 years ago
- Access to Biological Web Services from Python.☆312Updated last month
- A Python framework for structural systems biology☆109Updated 4 years ago
- The generic genome-scale metabolic model of Homo sapiens☆121Updated last week
- General low-level API☆50Updated 3 years ago
- Unified biological sequence manipulation in Python☆207Updated last year
- DNA plotting library for Python☆298Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆113Updated this week
- memote – the genome-scale metabolic model test suite☆140Updated last month
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 7 months ago
- An Open-Source web application to plan and document cloning and genome engineering☆36Updated last month
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- BGC Detection and Classification Using Deep Learning☆153Updated last year
- QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources☆44Updated last month
- Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project☆117Updated last year
- Toolbox for including enzyme constraints on a genome-scale model.☆78Updated this week
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 2 weeks ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆250Updated last week
- Tool for deep mutational scanning experiments.☆54Updated 6 months ago
- Build, share, and embed visualizations of metabolic pathways.☆225Updated last year
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago