Alternatives and similar repositories for pydna:

Users that are interested in pydna are comparing it to the libraries listed below

• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆149Updated 3 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆115Updated last month
• antismash / antismash
  antiSMASH
  ☆202Updated this week
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆240Updated 4 months ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆91Updated 8 months ago
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆280Updated this week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆56Updated last week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆320Updated this week
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆343Updated 2 months ago
• Global-Biofoundries-Alliance / SynBioPython
  General low-level API
  ☆50Updated 2 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆124Updated 4 months ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆197Updated last week
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆131Updated last year
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆231Updated 8 months ago
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆78Updated last week
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆318Updated 3 months ago
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆104Updated last week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆175Updated this week
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆141Updated last year
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆245Updated 6 months ago
• SysBioChalmers / RAVEN
  The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
  ☆108Updated 2 months ago
• VoigtLab / dnaplotlib
  DNA plotting library for Python
  ☆294Updated last year
• biosustain / cameo
  cameo - computer aided metabolic engineering & optimization
  ☆115Updated 2 years ago
• modernatx / seqlike
  Unified biological sequence manipulation in Python
  ☆207Updated 10 months ago
• lmdu / pyfastx
  a python package for fast random access to sequences from plain and gzipped FASTA/Q files
  ☆277Updated 3 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆176Updated last month
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆376Updated last year
• cokelaer / bioservices
  Access to Biological Web Services from Python.
  ☆295Updated last month
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆563Updated 4 months ago