Alternatives and similar repositories for LncmiRSRN

Users that are interested in LncmiRSRN are comparing it to the libraries listed below

• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• greenelab / gbm_immune_validation
  Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
  ☆14Updated 6 years ago
• zhiyhu / NMD-paper
  A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay
  ☆15Updated 5 years ago
• ShixiangWang / Variants2Neoantigen
  A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)
  ☆30Updated 6 years ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• Xiang-HF-Zhang / Dichotomous-of-innate-immune-landscape
  Dichotomous of innate immune landscape
  ☆17Updated 6 years ago
• Aufiero / circRNAprofiler
  ☆12Updated 8 months ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 2 months ago
• gaospecial / ccgraph
  ☆14Updated 6 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆28Updated 5 years ago
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 7 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• bioinformatist / CrossICC
  An Interactive Consensus Clustering framework for Cross-platform data analysis
  ☆14Updated 3 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆20Updated 7 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 6 years ago
• jmzeng1314 / IDmap
  ☆12Updated 7 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 4 years ago
• ait5 / CNApp
  CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…
  ☆20Updated 6 years ago
• junjunlab / tackPlotR
  An R package to visualize bigwigs.
  ☆32Updated 3 years ago
• junjunlab / BioSeqUtils
  Extract Sequence from Genome According to Annotation File
  ☆39Updated 9 months ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• guokai8 / VennDetail
  VennDetail: a bioconductor package for VennDiagram visualization and details extraction
  ☆30Updated 9 months ago
• MengjunWu / TCseq
  An R package for time course sequencing data analysis
  ☆20Updated 2 years ago
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆28Updated last week
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆23Updated 6 years ago
• miccec / yaGST
  ☆13Updated 8 years ago
• GerkeLab / TCGAhrd
  Homologous recombination deficiency in TCGA PanCancer Atlas
  ☆28Updated 5 years ago