zhangjunpeng411 / LncmiRSRN
LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network
☆13Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for LncmiRSRN
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆30Updated 3 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆13Updated 4 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆19Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Calculating Tumor microenvironment score☆27Updated last year
- R package☆21Updated 10 months ago
- MicrOSAtellite Instability Classifier☆15Updated 6 years ago
- ☆40Updated 6 years ago
- Integrating LASSO and bootstrapping algorithm to find best prognostic or predictive biomarkers☆20Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Kidney Epigenome and Transcriptome-based multi-stage Prioritization☆16Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆12Updated 3 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆17Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- ☆11Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆12Updated 9 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 6 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆10Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆24Updated 3 years ago
- ☆12Updated 7 years ago