dohlee / snakemake-wrappers
Snakemake wrappers for bioinformatics.
☆18Updated 2 years ago
Alternatives and similar repositories for snakemake-wrappers:
Users that are interested in snakemake-wrappers are comparing it to the libraries listed below
- A list of alternative splicing analysis resources☆42Updated 3 months ago
- ☆15Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Motif manipulation functions for R.☆28Updated 3 months ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- pathway based data integration and visualization☆40Updated 11 months ago
- ☆47Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Reduce + Visualize Gene Ontology☆24Updated 3 months ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆29Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated last month
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- ☆54Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated last month
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- RiboPlotR package for Ribo-plot☆14Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- ☆25Updated last month
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆37Updated 9 months ago
- An R interface to the MEME Suite☆49Updated 4 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago