An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
☆11Mar 16, 2026Updated 4 months ago
Alternatives and similar repositories for HmmUFOtu
Users that are interested in HmmUFOtu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 11 months ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆59Jul 9, 2024Updated 2 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆33May 1, 2025Updated last year
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆26May 18, 2024Updated 2 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Feb 5, 2025Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆11Nov 20, 2020Updated 5 years ago
- Exposing public genomics data via computable and searchable metadata☆13Jul 9, 2024Updated 2 years ago
- Massively parallel phylogenetic placement of genetic sequences☆91Jun 14, 2026Updated last month
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Deblur is a greedy deconvolution algorithm based on known read error profiles.☆100Mar 8, 2025Updated last year
- Executable files for usearch versions 5 through 11, donated to the public domain☆24Jun 15, 2024Updated 2 years ago
- compositional data analysis toolbox☆62Dec 15, 2022Updated 3 years ago
- R scripts for performing co-occurrence analyses☆36Jan 7, 2015Updated 11 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 3 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Collection of commonly used RDP Tools for easy building☆52Jun 8, 2023Updated 3 years ago
- Tools for finding mobile element insertions from single-end datasets☆24Dec 14, 2019Updated 6 years ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆65Apr 28, 2026Updated 3 months ago
- A tool to infer metagenomic sample composition☆20Oct 10, 2023Updated 2 years ago
- Phylogenetic Isometric Log Ratio☆19Apr 1, 2026Updated 4 months ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Jan 31, 2020Updated 6 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago