Grice-Lab / HmmUFOtuLinks
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
☆11Updated 5 months ago
Alternatives and similar repositories for HmmUFOtu
Users that are interested in HmmUFOtu are comparing it to the libraries listed below
Sorting:
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last week
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆25Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 3 weeks ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Working with the outputs of sourmash in R☆28Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 6 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆40Updated 9 months ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆58Updated last month
- que paquete☆9Updated last year