Grice-Lab / HmmUFOtuLinks
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
☆11Updated 3 months ago
Alternatives and similar repositories for HmmUFOtu
Users that are interested in HmmUFOtu are comparing it to the libraries listed below
Sorting:
- Dadaist2 🟨 Highway to R☆13Updated 11 months ago
- highthroughput rRNA sequence classification and OTU mapping for metagenomic samples☆25Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated last week
- Qiime2 snakemake pipeline☆20Updated 2 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated 2 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16Updated 8 months ago
- A Shotgun Metagenome Annotation Pipeline☆24Updated 8 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆55Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 3 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Updated 3 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- ☆22Updated 4 months ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated last month
- ☆44Updated last year
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 3 years ago