Grice-Lab / HmmUFOtuLinks
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
☆11Updated 4 months ago
Alternatives and similar repositories for HmmUFOtu
Users that are interested in HmmUFOtu are comparing it to the libraries listed below
Sorting:
- Dadaist2 🟨 Highway to R☆13Updated 3 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- A microbial profiling framework for metagenomic analysis☆24Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 7 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 10 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Surveillance of pathogens using population genomics and sequencing☆32Updated this week
- workflows for offline analysis of 16S rRNA Nanopore data☆13Updated 2 years ago
- MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.☆16Updated 2 years ago
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated last year
- ☆16Updated last month
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆30Updated 2 years ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago