BU-ISCIII / plasmidID
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
☆40Updated 3 years ago
Alternatives and similar repositories for plasmidID:
Users that are interested in plasmidID are comparing it to the libraries listed below
- IS mapping software☆53Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆46Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- whole genome MLST analysis☆41Updated last week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated last year
- Split Kmer Analysis☆62Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Collection of scripts for bacterial genomics