BU-ISCIII / plasmidIDLinks
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
☆43Updated 4 years ago
Alternatives and similar repositories for plasmidID
Users that are interested in plasmidID are comparing it to the libraries listed below
Sorting:
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 9 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Updated 3 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 6 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- Prediction of prophages from bacterial genomes☆81Updated this week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated this week
- IS mapping software☆57Updated 4 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- ☆37Updated 3 years ago
- whole genome MLST analysis☆51Updated 7 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- ☆84Updated 2 years ago
- SeqSero2☆39Updated 4 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Updated 7 years ago
- Gene Absence Presence Identification tool.☆27Updated 10 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆55Updated last year
- ☆56Updated last week
- Split Kmer Analysis☆67Updated 3 years ago