jaydevine / MusMorphLinks
MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.
☆11Updated 11 months ago
Alternatives and similar repositories for MusMorph
Users that are interested in MusMorph are comparing it to the libraries listed below
Sorting:
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆14Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- QuPath extension to interactively align images☆23Updated 2 weeks ago
- Tools for distributed alignment of massive images☆85Updated 3 weeks ago
- Developing a Brain Atlas through Deep Learning☆53Updated last year
- ☆26Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- The official QuPath extension for InstanSeg☆22Updated 2 weeks ago
- QuPath extension for Cellsparse☆19Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆87Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆20Updated 2 months ago
- Bio-Formats image file format to raw format converter☆94Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆143Updated 4 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆88Updated 4 years ago
- Raw format to OME-TIFF converter☆54Updated last month
- BIRDS plug-in on Fiji and attached jar package☆20Updated 3 years ago
- StarDist plugin for napari☆40Updated 10 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 5 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last month
- An introduction to bioimage analysis - http://bioimagebook.github.io☆71Updated 2 weeks ago
- ☆29Updated 5 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 4 months ago
- Script that registers Histology slices to volumetric image data☆11Updated last year
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated last month
- The ImageJ wiki☆27Updated last week
- ☆31Updated 4 years ago
- Read and write ImageJ ROI format.☆73Updated 2 months ago
- Process images using SimpleITK in napari☆21Updated 2 months ago
- Piecewise alignment for layers of mosaics☆27Updated last week