Alternatives and similar repositories for MusMorph

Users that are interested in MusMorph are comparing it to the libraries listed below

• AllenInstitute / open_dataset_tools
  Tools for accessing open data sets published by the Allen Institute for Brain Sciences
  ☆14Updated 4 years ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 9 months ago
• nickdelgrosso / ABBA-QuPath-RegistrationAnalysis
  A visualization app for 3D-registered data processed in ABBA and QuPath
  ☆18Updated 2 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated this week
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆49Updated 6 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• pmajka / poSSum
  ☆13Updated 5 years ago
• wahlby-lab / graph-iss
  Graph-based Decoding for In Situ Sequencing
  ☆10Updated 5 years ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated 3 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• grishkam / QuickFigures
  QuickFigures is a toolset for creating scientific figures see publication for details
  ☆35Updated last year
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆41Updated last month
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆123Updated this week
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆25Updated 3 weeks ago
• BioImaging-NKI / Cellpose-Fiji
  ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
  ☆15Updated 5 months ago
• AllenInstitute / cocoframer
  COmmon COordinate FRAMEwork in R
  ☆36Updated 5 years ago
• cantin-ortiz / molecular-atlas
  This repository contains the code used for the paper "Molecular Atlas of the Adult Mouse Brain".
  ☆16Updated 4 years ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆22Updated 2 months ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆50Updated last week
• LabTrivedi / MOrgAna
  ☆29Updated 7 months ago
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆25Updated this week
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆26Updated 3 months ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆96Updated this week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆52Updated last week
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated 3 weeks ago
• emanuega / MERlin
  MERlin is an extensible analysis pipeline applied to decoding MERFISH data
  ☆35Updated 3 years ago
• yapic / yapic
  Yet Another Pixel Classifier (based on deep learning)
  ☆36Updated last year
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆41Updated 3 weeks ago
• saalfeldlab / stitching-spark
  Reconstruct big images from overlapping tiled images on a Spark cluster.
  ☆34Updated last year