Alternatives and similar repositories for oddgenes

Users that are interested in oddgenes are comparing it to the libraries listed below

• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆331Updated 2 months ago
• fastqe / fastqe
  FASTQ sequence quality visualisation with Emoji
  ☆172Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆224Updated 3 weeks ago
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆170Updated 11 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆217Updated 2 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆304Updated this week
• bionitio-team / bionitio
  Demonstrating best practices for bioinformatics command line tools
  ☆117Updated 4 years ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆124Updated 2 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆222Updated 3 weeks ago
• alastair-droop / fqtools
  An efficient FASTQ manipulation suite
  ☆137Updated 5 years ago
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆137Updated this week
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆149Updated last year
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆136Updated 10 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆226Updated this week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆99Updated this week
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆133Updated 2 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆260Updated 3 weeks ago
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆130Updated 11 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆212Updated last year
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆161Updated 9 months ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆124Updated 5 years ago
• haowenz / chromap
  Fast alignment and preprocessing of chromatin profiles
  ☆200Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆175Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆306Updated 2 months ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated last week
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆138Updated 3 years ago
• najoshi / sickle
  Windowed Adaptive Trimming for fastq files using quality
  ☆219Updated 8 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆192Updated 2 years ago
• askimed / nf-test
  Simple test framework for Nextflow pipelines
  ☆160Updated 5 months ago