ntranoslab / celltypewriterLinks
☆13Updated 2 years ago
Alternatives and similar repositories for celltypewriter
Users that are interested in celltypewriter are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- Multi-omics factor analysis v2☆47Updated 9 months ago
- ☆37Updated last month
- Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data☆34Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 8 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- ☆29Updated 2 years ago
- Computational Biology- Spring 2021☆47Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆24Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆25Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆92Updated 2 weeks ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆12Updated last year
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆20Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆22Updated 2 years ago
- Scripts for using scanpy☆37Updated 4 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago