Alternatives and similar repositories for celltypewriter

Users that are interested in celltypewriter are comparing it to the libraries listed below

• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• vals / Blog
  ☆38Updated 2 weeks ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated last week
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 4 years ago
• normjam / benchmark
  Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
  ☆19Updated 6 years ago
• shangll123 / SpatialPCA
  Spatially aware dimension reduction for spatial transcriptomics.
  ☆63Updated 10 months ago
• pyrovelocity / pyrovelocity
  𝒫robabilistic modeling of RNA velocity ⬱
  ☆49Updated last week
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆64Updated last year
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆46Updated 2 years ago
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆56Updated 2 weeks ago
• bioFAM / slalom
  ☆29Updated 3 years ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆74Updated 3 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆25Updated 2 years ago
• almaan / eggplant
  ☆22Updated 3 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆72Updated 4 months ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 6 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆34Updated last year
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 7 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆36Updated 4 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆62Updated last month
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• cole-trapnell-lab / cicero
  ☆12Updated 2 years ago
• phoenixding / scdiff
  ☆28Updated 5 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆48Updated 8 months ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆46Updated 6 years ago