OSU-BMBL / ssread

Related projects: ⓘ

• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆14Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆19Updated 5 months ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• wenweixiong / MARVEL
  ☆38Updated last month
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆25Updated 3 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆26Updated 4 years ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 6 months ago
• chensong611 / SNARE_prep
  dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline
  ☆9Updated 4 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 8 months ago
• dibbelab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆14Updated last year
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 weeks ago
• zpliulab / scGENA
  single cell Gene co-Expression Network Analysis
  ☆9Updated 2 years ago
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆33Updated 3 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated last week
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆34Updated 2 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 4 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆27Updated 3 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆17Updated last year
• GreenleafLab / motifmatchr
  Fast motif matching in R
  ☆41Updated 7 months ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• KChen-lab / SCMarker
  Marker gene selection from scRNA-seq data
  ☆15Updated 4 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆20Updated 4 months ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆19Updated last year
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆26Updated 2 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 4 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆14Updated 2 years ago