OSU-BMBL / ssreadLinks
A single-cell and spatial RNA-seq database for Alzheimer’s Disease
☆24Updated last year
Alternatives and similar repositories for ssread
Users that are interested in ssread are comparing it to the libraries listed below
Sorting:
- Fast motif matching in R☆46Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆33Updated 3 years ago
- ☆35Updated 5 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Materials and scripts for building cell type encyclopedia table☆19Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- ☆47Updated 6 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Code related to the Celligner manuscript☆46Updated 4 years ago
- ☆16Updated 3 years ago
- ☆34Updated 6 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- scWGCNA☆61Updated 2 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆36Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago