ome / bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
☆397Updated last week
Alternatives and similar repositories for bioformats:
Users that are interested in bioformats are comparing it to the libraries listed below
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆211Updated last month
- ilastik-shell, applets, and workflows to string them together.☆371Updated this week
- C library for reading virtual slide images☆431Updated 2 weeks ago
- ImageJ2 programming examples☆185Updated 2 years ago
- Read and write life sciences file formats☆139Updated 7 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆213Updated 3 months ago
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆60Updated 4 years ago
- QuPath - Open-source bioimage analysis for research☆1,149Updated this week
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆153Updated 8 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆139Updated 2 months ago
- ImJoy: Deep Learning Made Easy!☆188Updated last year
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 2 years ago
- Bio-Formats image file format to raw format converter☆91Updated 3 weeks ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆189Updated this week
- Read and write ImageJ ROI format.☆72Updated 2 months ago
- Python bindings to OpenSlide☆392Updated last week
- The ImageJ plugin to run deep-learning models☆93Updated this week
- The official deployment of the Digital Slide Archive and HistomicsTK.☆120Updated this week
- A Python toolkit for pathology image analysis algorithms.☆418Updated last week
- Open Source Cross-Platform C++ library to read CZI image files☆72Updated 2 years ago
- The ImageJ wiki☆27Updated 3 weeks ago
- Conversion tool/library for converting whole slide images to DICOM☆82Updated 3 months ago
- CellProfiler tutorial pipelines and images☆93Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆158Updated this week
- ☆104Updated 2 weeks ago
- Open source Python library for building bioimage analysis pipelines☆161Updated this week
- Use ImageJ from Python☆499Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago