Alternatives and similar repositories for bioformats

Users that are interested in bioformats are comparing it to the libraries listed below

• ome / openmicroscopy
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …
  ☆214Updated 3 weeks ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 7 months ago
• petebankhead / qupath
  QuPath - Open-source bioimage analysis for research
  ☆50Updated this week
• imagej / tutorials
  ImageJ2 programming examples
  ☆194Updated 2 years ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆386Updated this week
• zeiss-microscopy / libCZI
  Open Source Cross-Platform C++ library to read CZI image files
  ☆72Updated 3 years ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆102Updated last month
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated last month
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆59Updated 4 years ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆97Updated 2 months ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆130Updated 4 months ago
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆131Updated last week
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆166Updated 5 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated 5 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆157Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated this week
• imagej / imagej.github.io
  The ImageJ wiki
  ☆28Updated this week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆99Updated last year
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆83Updated last week
• openslide / openslide
  C library for reading virtual slide images
  ☆469Updated last month
• saalfeldlab / paintera
  ☆111Updated 3 weeks ago
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆220Updated this week
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated 2 months ago
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆76Updated 5 months ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆141Updated last year
• imagej / pyimagej
  Use ImageJ from Python
  ☆521Updated 2 months ago
• clij / clij2
  GPU-accelerated image processing for everyone
  ☆55Updated last year
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆38Updated last month