ome / bioformatsLinks
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
☆408Updated 2 weeks ago
Alternatives and similar repositories for bioformats
Users that are interested in bioformats are comparing it to the libraries listed below
Sorting:
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆214Updated last week
- Read and write life sciences file formats☆142Updated 6 months ago
- ilastik-shell, applets, and workflows to string them together.☆385Updated last week
- QuPath - Open-source bioimage analysis for research☆49Updated last week
- ImageJ2 programming examples☆193Updated 2 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated 3 weeks ago
- The ImageJ plugin to run deep-learning models☆97Updated 2 months ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Updated 3 years ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆166Updated 5 months ago
- ☆111Updated last week
- C library for reading virtual slide images☆462Updated 2 weeks ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆157Updated 3 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 4 months ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆78Updated last month
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆218Updated last week
- Bio-Formats image file format to raw format converter☆102Updated last week
- Read and write ImageJ ROI format.☆83Updated 2 weeks ago
- Use ImageJ from Python☆522Updated last month
- Open source Python library for building bioimage analysis pipelines☆187Updated 2 weeks ago
- PAthological QUpath Obsession - QuPath and Python conversations☆129Updated 4 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆45Updated 8 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Updated 4 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated 2 months ago
- TrackMate is your buddy for your everyday tracking.☆223Updated last week
- The ImageJ wiki☆28Updated last week
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆25Updated 3 years ago