Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
☆425Aug 11, 2026Updated this week
Alternatives and similar repositories for bioformats
Users that are interested in bioformats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆221Updated this week
- Read and write life sciences file formats☆143Jun 12, 2025Updated last year
- QuPath - Open-source bioimage analysis for research☆1,414Updated this week
- C library for reading virtual slide images☆512Aug 2, 2026Updated last week
- Bio-Formats image file format to raw format converter☆110Aug 4, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆23Apr 1, 2026Updated 4 months ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆256Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 8 months ago
- SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so d…☆98Apr 23, 2026Updated 3 months ago
- Raw format to OME-TIFF converter☆57Jul 27, 2026Updated 2 weeks ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Sep 30, 2022Updated 3 years ago
- Examples of usage of the Bio-Formats API☆13Mar 18, 2026Updated 4 months ago
- native Python dataclasses for the OME data model☆68Apr 2, 2026Updated 4 months ago
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Read and write TIFF files.☆661Aug 1, 2026Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆66Oct 27, 2024Updated last year
- Microscope control and image acquisition integrated with ImageJ☆316Aug 7, 2026Updated last week
- Not HDF5☆204Jul 28, 2026Updated 2 weeks ago
- Python bindings to OpenSlide☆432Updated this week
- A "batteries-included" distribution of ImageJ☆1,007Jul 18, 2026Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆54Updated this week
- The python-microscopy environment - an open-source package for light microscopy☆99Updated this week
- OME model (specification, code generator, implementation)☆17Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆168Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Aug 4, 2026Updated last week
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 2 months ago
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 4 years ago
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 9 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Jun 25, 2026Updated last month
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆356Updated this week
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 7 months ago
- N-dimensional, multiresolution file format for Micro-Manager☆16Jun 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆75Updated this week
- Interface to the Bioformats Java library☆15Feb 17, 2026Updated 5 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆180Aug 7, 2026Updated last week
- PAthological QUpath Obsession - QuPath and Python conversations☆136Apr 30, 2026Updated 3 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- An open-source application for biological image analysis☆1,130Updated this week
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago