Alternatives and similar repositories for python-bioformats

Users that are interested in python-bioformats are comparing it to the libraries listed below

• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆215Updated 5 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆87Updated 11 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆134Updated last month
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆199Updated this week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆140Updated 2 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆142Updated 4 months ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆92Updated 3 weeks ago
• petebankhead / qupath
  QuPath - Open-source bioimage analysis for research
  ☆49Updated this week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆88Updated this week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆176Updated this week
• peng-lab / BaSiCPy
  ☆81Updated 3 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 10 months ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆160Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 7 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆134Updated 5 years ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆72Updated last month
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆72Updated last month
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 11 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆82Updated this week
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆38Updated 2 months ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆62Updated last year
• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 6 years ago
• zeiss-microscopy / libCZI
  Open Source Cross-Platform C++ library to read CZI image files
  ☆72Updated 2 years ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆175Updated this week
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆70Updated 7 months ago
• haesleinhuepf / devbio-napari
  ☆50Updated last month