CellProfiler / python-bioformatsLinks
Read and write life sciences file formats
☆140Updated 2 weeks ago
Alternatives and similar repositories for python-bioformats
Users that are interested in python-bioformats are comparing it to the libraries listed below
Sorting:
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 5 months ago
- multimodal whole slide image registration in a graph structure☆87Updated 11 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆134Updated last month
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆199Updated this week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆140Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 4 months ago
- Bio-Formats image file format to raw format converter☆92Updated 3 weeks ago
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated this week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆176Updated this week
- ☆81Updated 3 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆160Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆134Updated 5 years ago
- Read and write ImageJ ROI format.☆72Updated last month
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- Cloud-based data annotation tools for biological images☆81Updated last year
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- Tools for distributed alignment of massive images☆82Updated this week
- Python module utilizing libCZI for reading Zeiss CZI files.☆38Updated 2 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- Open Source Cross-Platform C++ library to read CZI image files☆72Updated 2 years ago
- CellProfiler tutorial pipelines and images☆93Updated last month
- Open source Python library for building bioimage analysis pipelines☆175Updated this week
- Cookiecutter for napari plugins☆70Updated 7 months ago
- ☆50Updated last month