Alternatives and similar repositories for python-bioformats

Users that are interested in python-bioformats are comparing it to the libraries listed below

• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆218Updated 8 months ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆97Updated last week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated last month
• peng-lab / BaSiCPy
  ☆87Updated 5 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆68Updated 11 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆139Updated last month
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆41Updated 5 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆180Updated this week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆168Updated 4 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated this week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆202Updated last week
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆146Updated 3 months ago
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆72Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 8 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated last month
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆118Updated this week
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆55Updated 10 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆69Updated 10 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated last week
• petebankhead / qupath
  QuPath - Open-source bioimage analysis for research
  ☆49Updated last week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆100Updated 2 weeks ago