Alternatives and similar repositories for python-bioformats

Users that are interested in python-bioformats are comparing it to the libraries listed below

• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆219Updated 8 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated last month
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆98Updated 3 weeks ago
• peng-lab / BaSiCPy
  ☆85Updated 6 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆140Updated last week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆206Updated last week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆181Updated last week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆68Updated last year
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 8 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆72Updated last month
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆168Updated 4 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated 3 weeks ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆148Updated this week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆118Updated this week
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆42Updated 5 months ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆74Updated 4 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 10 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated last week
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆150Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated 2 weeks ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated this week
• guiwitz / neubias_academy_biapy
  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
  ☆63Updated 2 years ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago