Alternatives and similar repositories for tifffile

Users that are interested in tifffile are comparing it to the libraries listed below

• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆238Updated 10 months ago
• imagej / pyimagej
  Use ImageJ from Python
  ☆521Updated 2 months ago
• girder / large_image
  Python modules to work with large multiresolution images.
  ☆219Updated this week
• rapidsai / cucim
  cuCIM - RAPIDS GPU-accelerated image processing library
  ☆439Updated this week
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆219Updated 2 weeks ago
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆92Updated last year
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 7 months ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆83Updated last month
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated last month
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆386Updated 2 weeks ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 6 months ago
• HenriquesLab / ZeroCostDL4Mic
  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
  ☆621Updated last month
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆148Updated 3 weeks ago
• micro-manager / pycro-manager
  Python control of micro-manager for customized data acquisition
  ☆176Updated 4 months ago
• pearu / pylibtiff
  A Python tiff library
  ☆138Updated last week
• dask / dask-image
  Distributed image processing
  ☆225Updated last month
• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆1,152Updated 3 weeks ago
• the-lay / tiler
  N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
  ☆74Updated 7 months ago
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆138Updated 3 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated last week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆160Updated 5 months ago
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated 7 months ago
• ome / bioformats
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…
  ☆409Updated last month
• usnistgov / MIST
  Microscopy Image Stitching Tool
  ☆157Updated 4 months ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆158Updated last month
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆117Updated this week
• CSBDeep / CSBDeep
  Image restoration for fluorescence microscopy
  ☆323Updated last month
• napari / napari-animation
  A napari plugin for making animations
  ☆92Updated this week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆135Updated last month
• peng-lab / BaSiCPy
  ☆91Updated 2 months ago