Alternatives and similar repositories for tifffile:

Users that are interested in tifffile are comparing it to the libraries listed below

• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆217Updated 4 months ago
• imagej / pyimagej
  Use ImageJ from Python
  ☆489Updated 3 weeks ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆142Updated this week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆209Updated last month
• girder / large_image
  Python modules to work with large multiresolution images.
  ☆199Updated this week
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆85Updated 4 months ago
• dask / dask-image
  Distributed image processing
  ☆216Updated 3 months ago
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆174Updated this week
• rapidsai / cucim
  cuCIM - RAPIDS GPU-accelerated image processing library
  ☆375Updated this week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 5 months ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆135Updated 2 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆127Updated 3 weeks ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆354Updated last week
• the-lay / tiler
  N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
  ☆68Updated last year
• usnistgov / MIST
  Microscopy Image Stitching Tool
  ☆136Updated 3 months ago
• DigitalSlideArchive / HistomicsTK
  A Python toolkit for pathology image analysis algorithms.
  ☆410Updated last week
• HenriquesLab / ZeroCostDL4Mic
  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
  ☆576Updated this week
• DigitalSlideArchive / tifftools
  Pure Python tools for reading and writing all TIFF IFDs, sub-IFDs, and tags.
  ☆50Updated 2 weeks ago
• hms-dbmi / viv
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
  ☆298Updated last week
• openslide / openslide-python
  Python bindings to OpenSlide
  ☆382Updated last month
• yfukai / m2stitch
  MIST-inspired microscope image stitching package
  ☆68Updated 11 months ago
• cgohlke / imagecodecs
  Image transformation, compression, and decompression codecs.
  ☆128Updated last month
• stardist / stardist
  StarDist - Object Detection with Star-convex Shapes
  ☆981Updated 4 months ago
• saalfeldlab / n5
  Not HDF5
  ☆176Updated 2 weeks ago
• computational-cell-analytics / micro-sam
  Segment Anything for Microscopy
  ☆426Updated this week
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆93Updated last month
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆68Updated 5 months ago
• pearu / pylibtiff
  A Python tiff library
  ☆130Updated 5 months ago
• micro-manager / pycro-manager
  Python control of micro-manager for customized data acquisition
  ☆168Updated 2 months ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆72Updated last week