choosehappy / HistoQC
HistoQC is an open-source quality control tool for digital pathology slides
☆291Updated 4 months ago
Alternatives and similar repositories for HistoQC
Users that are interested in HistoQC are comparing it to the libraries listed below
Sorting:
- Python Whole Slide Image Preprocessing☆288Updated 2 years ago
- A Python toolkit for pathology image analysis algorithms.☆418Updated last week
- Stain normalization tools for histological analysis and computational pathology☆140Updated 3 months ago
- AI-based pathology predicts origins for cancers of unknown primary - Nature☆172Updated 3 years ago
- Virtual Alignment of pathoLogy Image Series☆156Updated 5 months ago
- ⚡ Open-source software for deep learning-based digital pathology☆134Updated 10 months ago
- ☆343Updated 3 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆254Updated last year
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆100Updated 5 months ago
- Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch samplin…☆160Updated 9 months ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆120Updated this week
- Pretrained model for self supervised histopathology☆112Updated 2 years ago
- DeepLearning - Camelyon16 dataset☆120Updated 6 years ago
- A pipeline to segment tissue from the background in histological images☆69Updated 2 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 4 months ago
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆193Updated 2 weeks ago
- Toolkit for large-scale whole-slide image processing.☆208Updated this week
- Histopathology Image Analysis☆92Updated last year
- Interactive Segmentation of Nucleus☆63Updated 2 years ago
- Some stain normalization code☆88Updated 2 years ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆67Updated 2 years ago
- Tools to build deep learning pipelines.☆102Updated 6 months ago
- An open-source digital pathology based rapid image annotation tool☆77Updated this week
- List of pathology feature extractors and foundation models☆123Updated 3 months ago
- Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell☆211Updated 2 years ago
- Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024☆135Updated 3 years ago
- Powerful, open-source AI tools for digital pathology.☆300Updated 2 weeks ago
- Full package for applying deep learning to virtual slides.☆68Updated 6 years ago
- Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms☆29Updated last year
- A Girder plugin for pathology image annotations and analysis.☆70Updated this week