AllenCellModeling / napari-aicsimageioLinks
Multiple file format reading directly into napari using pure Python
☆39Updated 3 months ago
Alternatives and similar repositories for napari-aicsimageio
Users that are interested in napari-aicsimageio are comparing it to the libraries listed below
Sorting:
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- ☆51Updated 9 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- ☆22Updated 7 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated last week
- ☆15Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- StarDist plugin for napari☆38Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- ☆36Updated last year
- ☆12Updated last year
- ☆25Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 5 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 9 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- A template repo used to make new napari plugins☆31Updated last week
- ☆13Updated 2 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Updated this week