AllenCellModeling / napari-aicsimageioLinks
Multiple file format reading directly into napari using pure Python
☆36Updated 10 months ago
Alternatives and similar repositories for napari-aicsimageio
Users that are interested in napari-aicsimageio are comparing it to the libraries listed below
Sorting:
- Browse your OMERO database from within napari.☆37Updated this week
- ☆49Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last week
- A napari plugin for clustering objects according to their properties.☆85Updated last week
- ☆23Updated 3 weeks ago
- StarDist plugin for napari☆38Updated 9 months ago
- ☆15Updated 2 years ago
- ☆12Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆27Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated last year
- ☆23Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- native Python dataclasses for the OME data model☆56Updated last month
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated last month
- Command-line client for Fractal☆46Updated last week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 8 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆28Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last month
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- MethodsJ2☆14Updated 3 years ago
- Lectures for a napari training course☆50Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month