AllenCellModeling / napari-aicsimageio
Multiple file format reading directly into napari using pure Python
☆35Updated 7 months ago
Alternatives and similar repositories for napari-aicsimageio:
Users that are interested in napari-aicsimageio are comparing it to the libraries listed below
- Browse your OMERO database from within napari.☆36Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 4 months ago
- ☆12Updated 10 months ago
- ☆23Updated 5 months ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated last week
- ☆47Updated 4 months ago
- StarDist plugin for napari☆37Updated 6 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆13Updated last month
- Visualizing feature measurements on label images in napari☆10Updated 7 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- MethodsJ2☆14Updated 2 years ago
- Command-line client for Fractal☆45Updated this week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 3 months ago
- ☆15Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆77Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 5 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated 2 weeks ago
- native Python dataclasses for the OME data model☆55Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Lectures for a napari training course☆50Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- 1d plotting in napari-based canvas.☆26Updated this week
- ☆21Updated last year
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Guides and code for 3D nuclear instance segmentation☆21Updated 2 months ago