A "batteries-included" distribution of ImageJ
☆972May 12, 2026Updated last week
Alternatives and similar repositories for fiji
Users that are interested in fiji are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open scientific N-dimensional image processing☆1,373Aug 12, 2025Updated 9 months ago
- Public domain software for processing and analyzing scientific images☆756Updated this week
- Use ImageJ from Python☆532Mar 16, 2026Updated 2 months ago
- Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…☆419Mar 18, 2026Updated 2 months ago
- Fiji website☆38Mar 30, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Microscope control and image acquisition integrated with ImageJ☆304Updated this week
- ImageJ2 programming examples☆201Mar 20, 2023Updated 3 years ago
- Plugins collated for the Fiji Cookbook☆27Jun 14, 2022Updated 3 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Mar 3, 2026Updated 2 months ago
- A generic next-generation Java library for image processing☆320Feb 5, 2026Updated 3 months ago
- QuPath - Open-source bioimage analysis for research☆1,364May 13, 2026Updated last week
- An open-source application for biological image analysis☆1,114Updated this week
- GPU-accelerated image processing for everyone☆58Jul 4, 2024Updated last year
- The ImageJ wiki☆30Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A plugin framework and application container with built-in extensibility mechanism☆92Updated this week
- Fiji library to perform image segmentation based on the Weka learning schemes☆124Sep 28, 2024Updated last year
- TrackMate is your buddy for your everyday tracking.☆234Mar 25, 2026Updated 2 months ago
- ilastik-shell, applets, and workflows to string them together.☆397Updated this week
- ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy☆642Mar 29, 2026Updated last month
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 4 years ago
- Image restoration for fluorescence microscopy☆333Dec 8, 2025Updated 5 months ago
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆241Updated this week
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Stitching of large tiled datasets☆23Apr 21, 2026Updated last month
- napari: a fast, interactive, multi-dimensional image viewer for python☆2,660Updated this week
- ☆44May 16, 2026Updated last week
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,204Updated this week
- [OBSOLETE] Please use https://github.com/imagej/ImageJ instead.☆79Jan 20, 2022Updated 4 years ago
- SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so d…☆98Apr 23, 2026Updated last month
- mcib3d core library for 3D ImageJ suite☆15Oct 6, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fiji's Stitching plugins reconstruct big images from tiled input images.☆115Jan 22, 2025Updated last year
- StarDist - Object Detection with Star-convex Shapes☆1,214Feb 14, 2026Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆50May 11, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 5 months ago
- Read and write TIFF files.☆656May 15, 2026Updated last week
- Collection of mathematical morphology methods and plugins for ImageJ☆121May 7, 2026Updated 2 weeks ago
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆218Updated this week