zeiss-microscopy / libCZI
Open Source Cross-Platform C++ library to read CZI image files
☆70Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for libCZI
- Cookiecutter for napari plugins☆69Updated this week
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆48Updated 3 weeks ago
- Read and write life sciences file formats☆132Updated last month
- native Python dataclasses for the OME data model☆51Updated this week
- ☆66Updated 4 months ago
- Browse your OMERO database from within napari.☆33Updated this week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆126Updated 2 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆68Updated this week
- Multiple file format reading directly into napari using pure Python☆33Updated 3 months ago
- Bio-Formats image file format to raw format converter☆82Updated 2 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆54Updated this week
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆36Updated this week
- GPU-accelerated image processing for everyone☆48Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆37Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆47Updated 2 weeks ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆39Updated last month
- Raw format to OME-TIFF converter☆48Updated 2 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- QuPath - Open-source bioimage analysis for research☆49Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆23Updated 5 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆53Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆204Updated 2 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆117Updated 2 weeks ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆24Updated 2 years ago
- ☆32Updated this week
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- Command-line client for Fractal☆45Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated last week