Open Source Cross-Platform C++ library to read CZI image files
☆72Sep 30, 2022Updated 3 years ago
Alternatives and similar repositories for libCZI
Users that are interested in libCZI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆64Jan 30, 2026Updated last month
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆162Mar 3, 2026Updated 2 weeks ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 3 months ago
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆27Mar 16, 2026Updated last week
- Python module utilizing libCZI for reading Zeiss CZI files.☆47Apr 14, 2025Updated 11 months ago
- ☆41Mar 12, 2026Updated last week
- Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…☆415Updated this week
- Versatile acquisition software for serial block-face electron microscopy☆26Feb 6, 2026Updated last month
- Read and write life sciences file formats☆142Jun 12, 2025Updated 9 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…☆19Mar 12, 2026Updated last week
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 2 months ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Nov 13, 2025Updated 4 months ago
- Specification for the bioimage.io model description file.☆23Mar 16, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆222Dec 1, 2025Updated 3 months ago
- A high content analysis method to study skeletal muscle☆12Apr 26, 2024Updated last year
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated last month
- Read Carl Zeiss image files (CZI).☆35Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Dec 11, 2025Updated 3 months ago
- ☆38May 6, 2024Updated last year
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Oct 15, 2025Updated 5 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Reading HDF5 files with Zarr☆11Oct 5, 2021Updated 4 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆22Nov 14, 2024Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated 2 weeks ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 6 months ago
- Read Olympus image files (OIF and OIB).☆13Feb 9, 2026Updated last month
- Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher☆23Aug 29, 2024Updated last year
- Computer simulator of multiplex tissue images from a set of user-defined parameters☆10Dec 13, 2022Updated 3 years ago
- StarDist plugin for ImageJ☆30May 9, 2022Updated 3 years ago
- A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging format…☆14Mar 15, 2026Updated last week
- Modular, object-based analysis for ImageJ/Fiji☆16Updated this week
- Rust extension module for FIJI-like colormapping and channel blending☆19Feb 9, 2026Updated last month
- Bio-Formats image file format to raw format converter☆103Updated this week
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Material to showcase and test several tools and packages releated to ZEN, CZI image files and python packages related to those topics☆20Feb 25, 2026Updated 3 weeks ago
- Spotiflow plugin for napari☆15Feb 2, 2026Updated last month
- OME model (specification, code generator, implementation)☆16Jan 22, 2026Updated 2 months ago