bioinfo-pf-curie / geniac
Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow
☆8Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for geniac
- SQL support plugin for Nextflow☆26Updated last week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆20Updated last week
- Access nextflow variables from python scripts or notebooks☆21Updated 3 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 3 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week
- Portable WDL workflows for IDseq production pipelines☆31Updated 2 years ago
- simple comparison of snakemake, nextflow and cromwell/wdl☆49Updated 4 years ago
- Reference genome resource manager☆74Updated 11 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆41Updated last year
- ☆9Updated 2 weeks ago
- A metadata commons to store research software metadata☆40Updated this week
- Test data for MultiQC.☆20Updated 2 weeks ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- This repository contains Jupyter Notebooks containing GATK Best Practices Workflows☆24Updated 4 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆45Updated 4 months ago
- An R package to process and analyze transcriptomic data☆16Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆72Updated this week
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated last year
- ☆33Updated 2 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆11Updated last year
- The command-line interface to GGD☆42Updated 2 years ago
- Galaxy RNA workbench☆38Updated 4 years ago